Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.005G034300.1 |
Family | CBM43 |
Protein Properties | Length: 258 Molecular Weight: 27430.5 Isoelectric Point: 5.9655 |
Chromosome | Chromosome/Scaffold: 05 Start: 3235612 End: 3237951 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 170 | 251 | 8.3e-33 |
WCVAKPSVPDPIIQEAMNYACAAGADCDSIQPSGSCFQPDSLFAHASYAFNSYWQKSKLDGGSCEFGGTAILVAIDPSYNGC |
Full Sequence |
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Protein Sequence Length: 258 Download |
MGSKICMLLL YSTMAATLLT HCDARTSMGM MKDPKHGRSS VIKHTNKLQL MSKLMSLVME 60 QPTDNSNTQP YGVSSPFSLP PFDSLPPLNS PPYFPPPPSL SGTVLSPNPP GVLPSPPQTI 120 PTPMSPSGPI LSPPSPIESN PSPTVFFPPI VYPPPTVPPP PNMAPTTALW CVAKPSVPDP 180 IIQEAMNYAC AAGADCDSIQ PSGSCFQPDS LFAHASYAFN SYWQKSKLDG GSCEFGGTAI 240 LVAIDPSYNG CHFEYQY* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 2.0e-22 | 169 | 240 | 81 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-37 | 169 | 253 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN78496.1 | 0 | 4 | 256 | 12 | 262 | hypothetical protein [Vitis vinifera] |
EMBL | CBI34142.1 | 0 | 4 | 256 | 3 | 253 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_001117621.1 | 0.00000000008 | 3 | 118 | 8 | 134 | unknown protein [Arabidopsis thaliana] |
RefSeq | NP_001117621.1 | 0 | 112 | 255 | 248 | 395 | unknown protein [Arabidopsis thaliana] |
RefSeq | XP_002516415.1 | 0 | 64 | 256 | 2 | 263 | conserved hypothetical protein [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 7e-21 | 170 | 253 | 13 | 96 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |