| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.005G061900.1 |
| Family | GH28 |
| Protein Properties | Length: 422 Molecular Weight: 45520 Isoelectric Point: 7.8344 |
| Chromosome | Chromosome/Scaffold: 05 Start: 6532106 End: 6533909 |
| Description | polygalacturonase 4 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 73 | 408 | 0 |
| AACNFHGDAMMVIPEGEFLMGPVLFSGPCSNPSLLIIQVNGIVKAQSNMAYYRGGGDDTDWITFQAIDGLIVSGRGTFHGQGSQVWGFNDCARKSNCVRL PATLKFIKVTDAIIRGIKSIDPKGFHIMISMSRNFRIFSVDLQAPGDSPNTDGIHMSKSDLVKISKTVIATGDDCVSMIHGSTNISIKKVICGPGHGFSI GSLGHYDDEADVSGIIVKNCSLRETDNGVRIKTYKTDSPSKASGIIFQDLIMTRVRNPIIIDQEYGNTKYSQPSKVRISDVHYINIRGTSASKVAVDLLC SASNPCQGIHLDNVNLQYAGPPNDDMPFSSNCRNAR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 422 Download |
| MAAFAIVMMV CLVLIHGGQC KGLFNAAEAL HKAKDAENGD VGPDVKAFNV LDYGAKPDGK 60 TDTSINFRRT FEAACNFHGD AMMVIPEGEF LMGPVLFSGP CSNPSLLIIQ VNGIVKAQSN 120 MAYYRGGGDD TDWITFQAID GLIVSGRGTF HGQGSQVWGF NDCARKSNCV RLPATLKFIK 180 VTDAIIRGIK SIDPKGFHIM ISMSRNFRIF SVDLQAPGDS PNTDGIHMSK SDLVKISKTV 240 IATGDDCVSM IHGSTNISIK KVICGPGHGF SIGSLGHYDD EADVSGIIVK NCSLRETDNG 300 VRIKTYKTDS PSKASGIIFQ DLIMTRVRNP IIIDQEYGNT KYSQPSKVRI SDVHYINIRG 360 TSASKVAVDL LCSASNPCQG IHLDNVNLQY AGPPNDDMPF SSNCRNARVA YHGFQSPPPC 420 R* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 8.0e-79 | 48 | 420 | 378 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 2.0e-83 | 49 | 417 | 376 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-84 | 83 | 409 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 1.0e-85 | 46 | 420 | 380 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 1.0e-127 | 33 | 420 | 393 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN69218.1 | 0 | 43 | 416 | 51 | 422 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002272193.1 | 0 | 43 | 421 | 51 | 427 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002314372.1 | 0 | 43 | 421 | 44 | 410 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002334010.1 | 0 | 19 | 421 | 19 | 408 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002516967.1 | 0 | 43 | 421 | 47 | 412 | Exopolygalacturonase clone GBGE184 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ib4_B | 0.000000000000004 | 149 | 389 | 83 | 322 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose |
| PDB | 1ib4_A | 0.000000000000004 | 149 | 389 | 83 | 322 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose |
| PDB | 1ia5_A | 0.000000000000004 | 149 | 389 | 83 | 322 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 1bhe_A | 0.00000000000009 | 95 | 337 | 51 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 0.0000000000003 | 189 | 406 | 108 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
