| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.005G069900.1 |
| Family | GH28 |
| Protein Properties | Length: 479 Molecular Weight: 51811.8 Isoelectric Point: 6.2201 |
| Chromosome | Chromosome/Scaffold: 05 Start: 7573771 End: 7577510 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 101 | 440 | 0 |
| KAACAVESATVLVPSDKVFMITSTIFPGPCKPGLALQVDGVLMPPDGPDCWPKADSRQQWLVFYRLNDMKLTGNGVIEGNGQKWWDLPCKPHRGPNGSTL PGPCDSPTMIRFFMSSNLVVGGIKIQNSPQFHMKFDGCEGVLIEKLLISTPKLSPNTDGIHIGNTKSVGIYNSMISNGDDCISIGPGCSDVHIEGVTCGP SHGISIGSLGVHNSQACVSNITVRNTVIRESDNGVRIKTWQGGTGSVSGISFENIQMENVRNCINIDQYYCLQKACLNQTSAVYVRDVQYRNIKGSYDVR NTPIHFACSDTVACTNITMADVELMPHEGELMEEPFCWNA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 479 Download |
| MELGRGLLFI WILAILSFHH CSSNANARYH YHKKHKPKGS PGKSPVHVPA PPKNPDPPSI 60 PSDPYPNDPG DPTGSIFDVT SYGAVGDGCS DDTAAFMEAW KAACAVESAT VLVPSDKVFM 120 ITSTIFPGPC KPGLALQVDG VLMPPDGPDC WPKADSRQQW LVFYRLNDMK LTGNGVIEGN 180 GQKWWDLPCK PHRGPNGSTL PGPCDSPTMI RFFMSSNLVV GGIKIQNSPQ FHMKFDGCEG 240 VLIEKLLIST PKLSPNTDGI HIGNTKSVGI YNSMISNGDD CISIGPGCSD VHIEGVTCGP 300 SHGISIGSLG VHNSQACVSN ITVRNTVIRE SDNGVRIKTW QGGTGSVSGI SFENIQMENV 360 RNCINIDQYY CLQKACLNQT SAVYVRDVQY RNIKGSYDVR NTPIHFACSD TVACTNITMA 420 DVELMPHEGE LMEEPFCWNA YGIEETLSIP PIGCLLKGMP HAITESSQYS CSNENGRF* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 4.0e-75 | 74 | 430 | 362 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 5.0e-77 | 76 | 451 | 380 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-90 | 109 | 424 | 316 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 6.0e-92 | 73 | 424 | 358 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-112 | 76 | 451 | 379 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK95305.1 | 0 | 1 | 471 | 1 | 475 | AF410319_1 At1g48100/F21D18_17 [Arabidopsis thaliana] |
| EMBL | CBI25976.1 | 0 | 97 | 471 | 1 | 375 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002263668.1 | 0 | 18 | 471 | 17 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002312305.1 | 0 | 1 | 471 | 1 | 482 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002519290.1 | 0 | 1 | 471 | 1 | 479 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1czf_B | 4e-23 | 176 | 424 | 106 | 344 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1czf_A | 4e-23 | 176 | 424 | 106 | 344 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1ib4_B | 3e-22 | 158 | 424 | 60 | 321 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1ib4_A | 3e-22 | 158 | 424 | 60 | 321 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1ia5_A | 3e-22 | 158 | 424 | 60 | 321 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
