| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.005G082700.4 |
| Family | GT47 |
| Protein Properties | Length: 343 Molecular Weight: 39322.5 Isoelectric Point: 9.6276 |
| Chromosome | Chromosome/Scaffold: 05 Start: 10128625 End: 10133146 |
| Description | Exostosin family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT47 | 11 | 265 | 0 |
| RLLLESRFRTRKKEEADLFFVPAYVKCVRMLGGLNDKEINQTYVKVLSQMPYFRRSGGRDHIFVFPSGAGAHLFRSWATYINRSIILTPEGDRTDKKDTS AFNTWKDIIIPGNVDDGMMKTGATVFQPLPLSKRKYLANYLGRAQKKVGRLKLIELAKQYPDKLECPELQFSGPNKLGRVEYFQHLGNSKFCLAPRGESS WTLRFYESFFVECVPVILSDQVELPFQNVIDYTEISIKWPSTSIGPELLDYLASI | |||
| Full Sequence |
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| Protein Sequence Length: 343 Download |
| MPVSKASGVL RLLLESRFRT RKKEEADLFF VPAYVKCVRM LGGLNDKEIN QTYVKVLSQM 60 PYFRRSGGRD HIFVFPSGAG AHLFRSWATY INRSIILTPE GDRTDKKDTS AFNTWKDIII 120 PGNVDDGMMK TGATVFQPLP LSKRKYLANY LGRAQKKVGR LKLIELAKQY PDKLECPELQ 180 FSGPNKLGRV EYFQHLGNSK FCLAPRGESS WTLRFYESFF VECVPVILSD QVELPFQNVI 240 DYTEISIKWP STSIGPELLD YLASIPDEVI EQIIGRGRQV RCLWVYAPDS EPCSTMRALM 300 WELQRKVRQF HQSAETFWLH NGSVVNRNLV EFAKWKPPMP LP* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam03016 | Exostosin | 8.0e-42 | 9 | 265 | 269 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016020 | membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM61682.1 | 0 | 9 | 342 | 129 | 462 | unknown [Arabidopsis thaliana] |
| RefSeq | XP_002265632.1 | 0 | 9 | 342 | 126 | 459 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002300942.1 | 0 | 12 | 342 | 130 | 460 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002307477.1 | 0 | 9 | 342 | 127 | 460 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526175.1 | 0 | 9 | 342 | 120 | 453 | catalytic, putative [Ricinus communis] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| CX668832 | 291 | 29 | 319 | 0 |
| FE707914 | 279 | 9 | 287 | 0 |
| FE707913 | 274 | 70 | 343 | 0 |
| EH692645 | 270 | 46 | 315 | 0 |
| GR005989 | 247 | 76 | 322 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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