Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.005G121800.1 |
Family | AA7 |
Protein Properties | Length: 468 Molecular Weight: 51423.5 Isoelectric Point: 5.4544 |
Chromosome | Chromosome/Scaffold: 05 Start: 25847072 End: 25848770 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 56 | 323 | 0 |
PKPVAIVAPNHVSHVQATVICAKDNGVQIRVRSVGHDYEGLSYRSNVTFVILDMLNLPSIDVDVDNEVAFVQASATIGELYYKIANESKGHAYPAGVCPS LGTGGHFSGGGYGNMMRKYGLSVDNILDAQVVGADGNILDRASMGEDLFWAIRGGGGASFAVIVSWKIKLVQVPEKITVFTVPFTLEQGATDVAFKWQQV APKLPEDLYIRQIASVINGSCPLEKKILVSFMGLFLGEADKLVPLVNQSFPELNLTKEDCKEMSWLES |
Full Sequence |
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Protein Sequence Length: 468 Download |
MEATSDSSSQ VDKFLQCLAN SSALMLESIY TPSNSSFESA LQAYIRNRRF LTPETPKPVA 60 IVAPNHVSHV QATVICAKDN GVQIRVRSVG HDYEGLSYRS NVTFVILDML NLPSIDVDVD 120 NEVAFVQASA TIGELYYKIA NESKGHAYPA GVCPSLGTGG HFSGGGYGNM MRKYGLSVDN 180 ILDAQVVGAD GNILDRASMG EDLFWAIRGG GGASFAVIVS WKIKLVQVPE KITVFTVPFT 240 LEQGATDVAF KWQQVAPKLP EDLYIRQIAS VINGSCPLEK KILVSFMGLF LGEADKLVPL 300 VNQSFPELNL TKEDCKEMSW LESTVYWAGF PVGTPVQVLL NRTQGAPNIF KVKSDYVKTV 360 IPNEGLETIW QMLIGMGNTS AANISMQWNP YGGKMSEIPE SSTAFPHRSG NLFLIHNRNI 420 DRLRDMYDRM GPFVSKDPRE AFLNYRDIDI GSSPSDQTNF THAQVYGS |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
TIGR00387 | glcD | 0.004 | 61 | 249 | 201 | + glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity [Energy metabolism, Other]. | ||
COG0277 | GlcD | 3.0e-16 | 39 | 252 | 226 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam01565 | FAD_binding_4 | 6.0e-17 | 58 | 195 | 141 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002299007.1 | 0 | 12 | 467 | 25 | 491 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002299010.1 | 0 | 3 | 468 | 12 | 485 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317074.1 | 0 | 1 | 467 | 7 | 482 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317686.1 | 0 | 3 | 468 | 22 | 496 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529891.1 | 0 | 1 | 467 | 8 | 486 | Reticuline oxidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vte_A | 0 | 12 | 467 | 5 | 480 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 4dns_B | 0 | 8 | 451 | 6 | 445 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 8 | 451 | 6 | 445 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_B | 0 | 12 | 467 | 9 | 463 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_A | 0 | 12 | 467 | 9 | 463 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO777438 | 477 | 12 | 467 | 0 |
JK988562 | 298 | 28 | 325 | 0 |
GR929724 | 333 | 75 | 407 | 0 |
DY290183 | 327 | 90 | 416 | 0 |
DY262774 | 336 | 125 | 446 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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