| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.005G131300.1 |
| Family | GH28 |
| Protein Properties | Length: 368 Molecular Weight: 39413.5 Isoelectric Point: 6.7382 |
| Chromosome | Chromosome/Scaffold: 05 Start: 32232012 End: 32234007 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 29 | 355 | 0 |
| AGGETVTLEIPRGKTFLLNPLVFQGPCKAKAIRIQLGGTLIAPLSTSWANEGVDTWIQFSNVDNLYLDGDGKIDGRGSIWWQSCMKKSVYALHFNNCNGL QLKGLTHLNSPRAHISIKNCKDVIVSDLKISAPDESPNTDGIDISDSTSVQILQSIIATGDDCVAINAGSSFINITGVVCGPGHGISIGSLGDGGAYDTV EQVHVKNCTLRDTQNGVRIKTFQGCSGYARKISFEKIVLSNARNPIIINQFYQDKGKFSKGIMKAGAIEISDVTYSDIRGTSANDQAIDLRCDNVVGCRN IVMRNIDITPGVDCPKTYTVCNNAHGT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 368 Download |
| MDYGATGNGQ IDDSQAFNKA WKDICNANAG GETVTLEIPR GKTFLLNPLV FQGPCKAKAI 60 RIQLGGTLIA PLSTSWANEG VDTWIQFSNV DNLYLDGDGK IDGRGSIWWQ SCMKKSVYAL 120 HFNNCNGLQL KGLTHLNSPR AHISIKNCKD VIVSDLKISA PDESPNTDGI DISDSTSVQI 180 LQSIIATGDD CVAINAGSSF INITGVVCGP GHGISIGSLG DGGAYDTVEQ VHVKNCTLRD 240 TQNGVRIKTF QGCSGYARKI SFEKIVLSNA RNPIIINQFY QDKGKFSKGI MKAGAIEISD 300 VTYSDIRGTS ANDQAIDLRC DNVVGCRNIV MRNIDITPGV DCPKTYTVCN NAHGTATETQ 360 PRVPCLS* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 3.0e-84 | 2 | 339 | 348 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-88 | 29 | 356 | 334 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 4.0e-91 | 2 | 367 | 375 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 2.0e-110 | 3 | 367 | 367 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 1.0e-119 | 1 | 359 | 362 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAY21049.1 | 0 | 1 | 367 | 33 | 397 | PGN [Glycine max] |
| GenBank | ABD28723.1 | 0 | 1 | 366 | 19 | 390 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| RefSeq | NP_197222.1 | 0 | 3 | 366 | 44 | 419 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002324855.1 | 0 | 1 | 367 | 30 | 395 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515526.1 | 0 | 1 | 367 | 31 | 393 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 3e-25 | 35 | 351 | 25 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 3e-25 | 35 | 351 | 25 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 3e-25 | 35 | 351 | 25 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 3e-25 | 35 | 351 | 25 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 3e-25 | 35 | 351 | 25 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CX192293 | 248 | 38 | 285 | 0 |
| DY961682 | 260 | 1 | 250 | 0 |
| CV536748 | 261 | 66 | 320 | 0 |
| EY474520 | 256 | 112 | 367 | 0 |
| CV538127 | 234 | 25 | 252 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
