Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.005G138000.2 |
Family | CBM57 |
Protein Properties | Length: 565 Molecular Weight: 61942.9 Isoelectric Point: 5.3243 |
Chromosome | Chromosome/Scaffold: 05 Start: 35767398 End: 35774202 |
Description | Di-glucose binding protein with Leucine-rich repeat domain |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM57 | 215 | 355 | 1.1e-24 |
DAFGRSWQSDSDYRAGKSESAKVITTKEKITGTEKAPNYFPMKLYQSAVTIEGRLEYELPVDAKLDYLVWFHFAEIDSTVKKAGERVFDVLVNDKNVSRV DIFKEVGSFVAYSLNYTEKNLSSSVLNVKLSPVAGAPLICG |
Full Sequence |
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Protein Sequence Length: 565 Download |
MSFLFLFLLS LAPLFHSSSP LPYPYNTSFH IDCGSSTPST DSYNISWLPD KFFTGGSTSV 60 VSEPLHFHLQ HEKTLRYFPL SSGKKNCYNI PLPAGRYYIR TFTVYDNYDG KSHSPSFDAS 120 VEGTLVFSWR SPWPESLTRD GAYSDLFAFV KDGQLDLCFY SIATDPPVIA SLEVVQIDPL 180 SYNSAQTGDS YILVNYGRLS PGSSQWGPGF TSDPDAFGRS WQSDSDYRAG KSESAKVITT 240 KEKITGTEKA PNYFPMKLYQ SAVTIEGRLE YELPVDAKLD YLVWFHFAEI DSTVKKAGER 300 VFDVLVNDKN VSRVDIFKEV GSFVAYSLNY TEKNLSSSVL NVKLSPVAGA PLICGLENYA 360 MVPADLATVP EQVVAMKALK DSLCVPDRMG WNGDPCAPTD WDAWEGVTCH TNKNGTGLVI 420 TQIELGSQGL KGYISEQISL LSNLINLNLS TNSLDGTLPI GLGQKSLARL DLSDNQFSGS 480 IPESLTSSNL QLVRLNNNLL EGRVPEELYS VGVHGGTIDL SGNKGLCGVP PLPDCPLFWE 540 NGRLSKGGKI HLLRRGTGIK DRSH* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN00113 | PLN00113 | 0.0004 | 423 | 524 | 103 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
pfam11721 | Malectin | 1.0e-5 | 27 | 160 | 152 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. | ||
pfam11721 | Malectin | 1.0e-9 | 258 | 323 | 67 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. | ||
pfam12819 | Malectin_like | 2.0e-55 | 31 | 361 | 352 | + Carbohydrate-binding protein of the ER. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. The domain is found on a number of plant receptor kinases. | ||
PLN03150 | PLN03150 | 1.0e-94 | 31 | 550 | 544 | + hypothetical protein; Provisional |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAG50525.1 | 0 | 21 | 549 | 22 | 530 | AC084221_7 hypothetical protein [Arabidopsis thaliana] |
RefSeq | NP_564237.2 | 0 | 21 | 549 | 22 | 553 | leucine-rich repeat protein-related [Arabidopsis thaliana] |
RefSeq | XP_002281668.1 | 0 | 19 | 549 | 21 | 552 | PREDICTED: similar to leucine-rich repeat protein-related [Vitis vinifera] |
RefSeq | XP_002457393.1 | 0 | 26 | 549 | 27 | 555 | hypothetical protein SORBIDRAFT_03g006620 [Sorghum bicolor] |
RefSeq | XP_002524408.1 | 0 | 24 | 549 | 19 | 547 | serine-threonine protein kinase, plant-type, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3rj0_A | 0.000005 | 394 | 535 | 608 | 745 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
PDB | 3rj0_A | 0.0005 | 430 | 509 | 475 | 556 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
PDB | 3rj0_A | 0.002 | 297 | 564 | 328 | 585 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |