Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.005G174600.1 |
Family | PL1 |
Protein Properties | Length: 407 Molecular Weight: 44664.4 Isoelectric Point: 7.323 |
Chromosome | Chromosome/Scaffold: 05 Start: 50854681 End: 50856710 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 126 | 325 | 0 |
WIIFARDMTIKLKEELLMNSFKTIDGRGVSVHISGGPCITVQYVTNIIIHGINIHDCKRGGNAYVRDSPTHYGWRTISDGDGVSIFGGSHVWVDHCSLSN CNDGLIDAIHGSTAITISNNYLTHHNKVMLLGHSDTYKQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRFLA |
Full Sequence |
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Protein Sequence Length: 407 Download |
MAIPLSFFLL LFPLLAPTFV LSSPVQDPEQ VVQQVNESIR NATMARRSLG FLSCGTGNPI 60 DDCWRCDHHW EKNRQKLADC AIGFGKHAIG GRDGKIYVVT DPSDHDPVNP KPGTLRYAVI 120 QDEPLWIIFA RDMTIKLKEE LLMNSFKTID GRGVSVHISG GPCITVQYVT NIIIHGINIH 180 DCKRGGNAYV RDSPTHYGWR TISDGDGVSI FGGSHVWVDH CSLSNCNDGL IDAIHGSTAI 240 TISNNYLTHH NKVMLLGHSD TYKQDKNMQV TIAFNHFGEG LVQRMPRCRH GYFHVVNNDY 300 THWEMYAIGG SADPTINSQG NRFLAPNDAD NKEVTKHEDA PQSQWKHWNW RSEGDLMLNG 360 AFFTASGTGA SSSYAKASSL GARPSSLVSS LTAGAGALVC KKGSHC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 8.0e-25 | 145 | 323 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 6.0e-69 | 138 | 323 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-76 | 132 | 327 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK94358.1 | 0 | 16 | 406 | 15 | 402 | unknown [Populus trichocarpa] |
DDBJ | BAB59066.1 | 0 | 23 | 406 | 29 | 409 | pectate lyase [Salix gilgiana] |
RefSeq | XP_002285340.1 | 0 | 22 | 406 | 22 | 403 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311747.1 | 0 | 1 | 406 | 1 | 402 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515037.1 | 0 | 1 | 406 | 1 | 404 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 58 | 399 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 58 | 399 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-17 | 77 | 325 | 2 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jta_A | 0.00000000000002 | 187 | 397 | 120 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jrg_B | 0.00000000000002 | 187 | 397 | 120 | 358 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |