Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.005G174600.2 |
Family | PL1 |
Protein Properties | Length: 356 Molecular Weight: 39231.3 Isoelectric Point: 6.7862 |
Chromosome | Chromosome/Scaffold: 05 Start: 50854700 End: 50856677 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 126 | 325 | 0 |
WIIFARDMTIKLKEELLMNSFKTIDGRGVSVHISGGPCITVQYVTNIIIHGINIHDCKRGGNAYVRDSPTHYGWRTISDGDGVSIFGGSHVWVDHCSLSN CNDGLIDAIHGSTAITISNNYLTHHNKVMLLGHSDTYKQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRFLA |
Full Sequence |
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Protein Sequence Length: 356 Download |
MAIPLSFFLL LFPLLAPTFV LSSPVQDPEQ VVQQVNESIR NATMARRSLG FLSCGTGNPI 60 DDCWRCDHHW EKNRQKLADC AIGFGKHAIG GRDGKIYVVT DPSDHDPVNP KPGTLRYAVI 120 QDEPLWIIFA RDMTIKLKEE LLMNSFKTID GRGVSVHISG GPCITVQYVT NIIIHGINIH 180 DCKRGGNAYV RDSPTHYGWR TISDGDGVSI FGGSHVWVDH CSLSNCNDGL IDAIHGSTAI 240 TISNNYLTHH NKVMLLGHSD TYKQDKNMQV TIAFNHFGEG LVQRMPRCRH GYFHVVNNDY 300 THWEMYAIGG SADPTINSQG NRFLAPNDAD NKEVYTIISL IGSNIETGGG GGERG* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 5.0e-24 | 145 | 323 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-67 | 138 | 323 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 5.0e-74 | 132 | 327 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU21247.1 | 0 | 17 | 334 | 18 | 334 | unknown [Glycine max] |
DDBJ | BAB10560.1 | 0 | 5 | 334 | 7 | 336 | pectate lyase [Arabidopsis thaliana] |
DDBJ | BAB59066.1 | 0 | 23 | 334 | 29 | 337 | pectate lyase [Salix gilgiana] |
RefSeq | NP_564906.1 | 0 | 17 | 334 | 22 | 336 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | NP_568967.1 | 0 | 5 | 334 | 29 | 358 | pectate lyase family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 58 | 334 | 2 | 279 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 58 | 334 | 2 | 279 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-17 | 77 | 324 | 2 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 0.00000000000002 | 187 | 343 | 120 | 307 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 0.00000000000002 | 187 | 343 | 120 | 307 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |