| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.005G181300.1 |
| Family | GH28 |
| Protein Properties | Length: 1101 Molecular Weight: 121650 Isoelectric Point: 5.9523 |
| Chromosome | Chromosome/Scaffold: 05 Start: 53098518 End: 53104502 |
| Description | Tetratricopeptide repeat (TPR)-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 725 | 1055 | 0 |
| TSCATSKSVLLVPPGHRYLVNATRFKGPCEERLVVQIDGTIVAPDEPNDWDPNLPRNWLVFSKLEGVVFQGNGVIDGSGSKWWASSCKKNKSNPCRGAPT ALTIDSSSSIKVKGLTIQNSQQMNFVISRCESVRVSEVQVSCPGDSPNTDGIHITGSTNVVLQDSKIGTGDDCISIVNASSGIKMKRIYCGPGHGVSIGS LGKDNSTAIVTKVVLDTALLRETTNGVRIKTWQGGSGYVRGVRFENVRMEDVANPIIIDQFYCDSPKTCQNQTSAVQISQIMYRNISGTTKSKEAMKFAC SDTTPCSNIVLSNINLEKKDGTAETYCNSAQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 1101 Download |
| MRLSGFLSLV RTLPILAQSN YRAFTSYCNI NPDLGVYYKN KTINELIRSR RLDDAQNLFD 60 QMSIRDSITY NLLITGHGRY GNPKQALYIY KEMVSQEIQE TGPTYSSVIT VCANEGFYRE 120 GIQVHCRVIS LGFGLNLFIG SSLVNLYLHM GLVDVAWKLF DQLPERNLAA WNLLLNGFLE 180 LGKIEELFGL HDQMKWEGVK PNGLSFCYLI RACCNARFLD EGMQLHCHVI KAGWVECNVF 240 VANALVDFYS ACGNFIDARK AFLLIPVEDV ISWNSIISVY VENDLLYDAI ELLSRMHFWD 300 KKPSIRSFVG LLNLSSRRED ILLGRQIHCF ITKVGFDLGS VHIQSALIDM YGKCGEIESS 360 LSVYGRASKR TLECCNSLIT SFLHCGITGD VFEIFGLMVD EGIRIDEVTL STTLKALSLS 420 TWASLDSCRL LHCCAIKSGY ESDVAVSCSL IDLYSRCGHF ELSRKVFETL PLPNIFCFAS 480 IINGYARNGM GNESVSLLEA MIQKGLVPDK VTFLCVLNGC NHAGLLEEGK FVFNLMKSFG 540 ICPERQHFSC MVDLLGRAGL VYEAEELLQQ SPGGGDSVMW SSLLRSCGVH KNEIVGKRVA 600 KVLMELGQDS FAIYLQVSNF YSEVGEFKAS LQIRELAMAR KVMREIGHSS IEVKTYIGGN 660 MLYHKFNILG ELEDLDIAEE DMELFEDPSW ISERGGKVLV NVDSFGAVGD GVSDDTEAFR 720 KAWNTSCATS KSVLLVPPGH RYLVNATRFK GPCEERLVVQ IDGTIVAPDE PNDWDPNLPR 780 NWLVFSKLEG VVFQGNGVID GSGSKWWASS CKKNKSNPCR GAPTALTIDS SSSIKVKGLT 840 IQNSQQMNFV ISRCESVRVS EVQVSCPGDS PNTDGIHITG STNVVLQDSK IGTGDDCISI 900 VNASSGIKMK RIYCGPGHGV SIGSLGKDNS TAIVTKVVLD TALLRETTNG VRIKTWQGGS 960 GYVRGVRFEN VRMEDVANPI IIDQFYCDSP KTCQNQTSAV QISQIMYRNI SGTTKSKEAM 1020 KFACSDTTPC SNIVLSNINL EKKDGTAETY CNSAQGFGYG IVHPSADCLS SNDKGYILID 1080 HKENSELAEP TGDHIVHTEL * 1140 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 2.0e-87 | 701 | 1056 | 360 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 2.0e-91 | 700 | 1070 | 379 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-98 | 727 | 1054 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 7.0e-120 | 700 | 1064 | 369 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-143 | 694 | 1088 | 397 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF79584.1 | 0 | 24 | 1095 | 34 | 1161 | AC007945_4 F28C11.9 [Arabidopsis thaliana] |
| EMBL | CAN65318.1 | 0 | 26 | 1100 | 35 | 1052 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI28554.1 | 0 | 26 | 1100 | 35 | 1111 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002299032.1 | 0 | 657 | 1100 | 19 | 469 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002328586.1 | 0 | 7 | 653 | 12 | 677 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-19 | 795 | 986 | 115 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 2e-19 | 692 | 1059 | 13 | 358 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 2iq7_G | 4e-18 | 799 | 1051 | 80 | 328 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 4e-18 | 799 | 1051 | 80 | 328 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 4e-18 | 799 | 1051 | 80 | 328 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
