| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.005G181400.1 |
| Family | GH28 |
| Protein Properties | Length: 520 Molecular Weight: 56573.2 Isoelectric Point: 7.9798 |
| Chromosome | Chromosome/Scaffold: 05 Start: 53147999 End: 53153188 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 129 | 474 | 0 |
| AACKVEASTVVVPAEFVFLVGPISFSGPYCQANIVFQLDGTIIAPTDARPWGKGLLQWLEFTKLKGIAIQGKGILDGRGSGWWQDAPYEDPYDDERKLII PLNSTVQERPPMPVRNELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCMGVVVHDITVSSPGDSPNTDGIHLQNSNDVLIHSSNLACGDD CVSIQTGCSNVYIHNVNCGPGHGISIGSLGRDNTKACVSNITVRDIVMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKRKCSNET AAVALSGITYEKIRGTYTVKPVHFACSDSLPCIGVTLSAIELKPVQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 520 Download |
| MGGVNFRSLT FMILIAFFVW CSSIETCIAR RGKHWRQSRY AAALSKKKGG SHGHRNYHNG 60 GSKPKPPPPQ SHKATPSPKP KEEVPPSTPS PHGGYSYDQQ STVFNVLDFG AKGDGKSDDT 120 KAFQDTWAAA CKVEASTVVV PAEFVFLVGP ISFSGPYCQA NIVFQLDGTI IAPTDARPWG 180 KGLLQWLEFT KLKGIAIQGK GILDGRGSGW WQDAPYEDPY DDERKLIIPL NSTVQERPPM 240 PVRNELSGKM PSIKPTALRF YGSFNVTVTG ITIQNSPQCH LKFDNCMGVV VHDITVSSPG 300 DSPNTDGIHL QNSNDVLIHS SNLACGDDCV SIQTGCSNVY IHNVNCGPGH GISIGSLGRD 360 NTKACVSNIT VRDIVMHNTM NGVRIKTWQG GSGSVQGVLF SNIQVSEVQL PIVIDQFYCD 420 KRKCSNETAA VALSGITYEK IRGTYTVKPV HFACSDSLPC IGVTLSAIEL KPVQERYHLY 480 DPFCWQTFGE LTTPTVPPIS CLQIGKPTNN RVQSDHDVC* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 1.0e-78 | 101 | 471 | 376 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03010 | PLN03010 | 9.0e-81 | 104 | 470 | 372 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-88 | 135 | 470 | 337 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 1.0e-89 | 102 | 471 | 374 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 4.0e-104 | 103 | 498 | 401 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK95830.1 | 0 | 1 | 519 | 4 | 516 | unknown [Populus trichocarpa] |
| RefSeq | NP_563875.6 | 0 | 4 | 519 | 7 | 532 | polygalacturonase [Arabidopsis thaliana] |
| RefSeq | XP_002266600.1 | 0 | 1 | 519 | 1 | 505 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002311773.1 | 0 | 1 | 519 | 4 | 517 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002525361.1 | 0 | 1 | 519 | 1 | 519 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-24 | 145 | 426 | 51 | 321 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 3jur_D | 2e-23 | 105 | 418 | 29 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 2e-23 | 105 | 418 | 29 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 2e-23 | 105 | 418 | 29 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 2e-23 | 105 | 418 | 29 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
