Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.005G258000.1 |
Family | GH19 |
Protein Properties | Length: 328 Molecular Weight: 35832.3 Isoelectric Point: 7.926 |
Chromosome | Chromosome/Scaffold: 05 Start: 63411249 End: 63413112 |
Description | basic chitinase |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH19 | 79 | 315 | 0 |
SSIVTREVFEEMLPYRNDPRCPAAGFYTYEALIAAAKAYPAFAATGDDATRKREVAAFFGQTSHETAAGRGRNPPGGPFVWGYCYNKEVKPLSEYCDGTN PQFPCVPGQKYYGRGPIQLTWNYNYGQFGAAIGKEKELLENPDLLLTDASLAFQSALWFWMTPQRSMPSCHDVIVGAWMPSARDKAAGRFPGYGVITNII NGGQCGRGRNAAGEDRIGFYKRYCDMFGVDCGDYLDC |
Full Sequence |
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Protein Sequence Length: 328 Download |
MRAPALSFCS NALPGSAMQC EKQSCSATAM FPTAQWCCRG ANNDNYRHKK ISFRSYCNKS 60 DAGCGCGCGG GSDGGGGLSS IVTREVFEEM LPYRNDPRCP AAGFYTYEAL IAAAKAYPAF 120 AATGDDATRK REVAAFFGQT SHETAAGRGR NPPGGPFVWG YCYNKEVKPL SEYCDGTNPQ 180 FPCVPGQKYY GRGPIQLTWN YNYGQFGAAI GKEKELLENP DLLLTDASLA FQSALWFWMT 240 PQRSMPSCHD VIVGAWMPSA RDKAAGRFPG YGVITNIING GQCGRGRNAA GEDRIGFYKR 300 YCDMFGVDCG DYLDCYNQKD FRKDFLY* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
COG3179 | COG3179 | 7.0e-6 | 186 | 300 | 116 | + Predicted chitinase [General function prediction only] |
cd00442 | lysozyme_like | 3.0e-10 | 181 | 278 | 98 | + lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases. All the members are involved in the hydrolysis of beta-1,4- linked polysaccharides. |
cd00325 | chitinase_glyco_hydro_19 | 3.0e-106 | 82 | 315 | 235 | + Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the procaryotic/eucaryotic divergence. |
pfam00182 | Glyco_hydro_19 | 1.0e-106 | 81 | 315 | 236 | + Chitinase class I. |
Gene Ontology | |
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GO Term | Description |
GO:0004568 | chitinase activity |
GO:0006032 | chitin catabolic process |
GO:0016998 | cell wall macromolecule catabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD11255.1 | 0 | 78 | 321 | 52 | 293 | class I chitinase [Gossypium hirsutum] |
GenBank | AAG23965.1 | 0 | 56 | 326 | 22 | 291 | AF307511_1 class I chitinase [Vigna unguiculata subsp. sesquipedalis] |
Swiss-Prot | Q39785 | 0 | 78 | 321 | 52 | 293 | CHI2_GOSHI RecName: Full=Endochitinase 2; Flags: Precursor |
Swiss-Prot | Q39799 | 0 | 78 | 321 | 74 | 315 | CHI1_GOSHI RecName: Full=Endochitinase 1; Flags: Precursor |
Swiss-Prot | Q41596 | 0 | 8 | 323 | 12 | 314 | CHI1_THECC RecName: Full=Endochitinase 1; Flags: Precursor |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3cql_B | 0 | 77 | 321 | 1 | 242 | A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica Papaya |
PDB | 3cql_A | 0 | 77 | 321 | 1 | 242 | A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica Papaya |
PDB | 4dyg_B | 0 | 78 | 321 | 3 | 243 | A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica Papaya |
PDB | 4dyg_A | 0 | 78 | 321 | 3 | 243 | A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica Papaya |
PDB | 4dwx_B | 0 | 78 | 321 | 3 | 243 | A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye Seeds |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JG451082 | 244 | 85 | 328 | 0 |
ES795253 | 321 | 1 | 321 | 0 |
DT553571 | 266 | 1 | 264 | 0 |
DT550621 | 311 | 1 | 311 | 0 |
DT572138 | 299 | 1 | 299 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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