Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.005G258100.1 |
Family | GH19 |
Protein Properties | Length: 342 Molecular Weight: 36549.6 Isoelectric Point: 4.2904 |
Chromosome | Chromosome/Scaffold: 05 Start: 63416203 End: 63417743 |
Description | basic chitinase |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH19 | 92 | 326 | 0 |
DIISSELFEEMLPYRNDPRCPAANFYTYDAFIAAAKLYPDFAATGDNDTRKREVAAFLGQTSHETTGGWDGAPGGRYAWGYCFNEEVGCPAGYCEYNPNY PCYPGVNYCGRGPMQLSWNYNYGQFGESIGQKEELLQHPEVLKTNVTLSFMSAFWFWMTAQPPKPSCHSVITGEWIPSANDVAAGRLPGYGVTTNIINGG LECGHGPDSRVESRIKFYERYCDILGVSYGPDLDC |
Full Sequence |
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Protein Sequence Length: 342 Download |
MRLHTLLFSS LFLSYAVVLA TAVQCGEEAG GALCPGGICC SRWGYCGTTD SYCLEENGCQ 60 LNCTDGDSGG GGGGGGGGGG GGSSGDGGAL GDIISSELFE EMLPYRNDPR CPAANFYTYD 120 AFIAAAKLYP DFAATGDNDT RKREVAAFLG QTSHETTGGW DGAPGGRYAW GYCFNEEVGC 180 PAGYCEYNPN YPCYPGVNYC GRGPMQLSWN YNYGQFGESI GQKEELLQHP EVLKTNVTLS 240 FMSAFWFWMT AQPPKPSCHS VITGEWIPSA NDVAAGRLPG YGVTTNIING GLECGHGPDS 300 RVESRIKFYE RYCDILGVSY GPDLDCYNQR PFSWGLLVES I* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd00035 | ChtBD1 | 9.0e-10 | 24 | 63 | 40 | + Hevein or type 1 chitin binding domain. Hevein or type 1 chitin binding domain (ChtBD1), a lectin domain found in proteins from plants and fungi that bind N-acetylglucosamine, plant endochitinases, wound-induced proteins such as hevein, a major IgE-binding allergen in natural rubber latex, and the alpha subunit of Kluyveromyces lactis killer toxin. This domain is involved in the recognition and/or binding of chitin subunits; it typically occurs N-terminal to glycosyl hydrolase domains in chitinases, together with other carbohydrate-binding domains, or by itself in tandem-repeat arrangements. | ||
pfam00187 | Chitin_bind_1 | 2.0e-10 | 24 | 63 | 40 | + Chitin recognition protein. | ||
cd06921 | ChtBD1_GH19_hevein | 4.0e-12 | 23 | 63 | 41 | + Hevein or Type 1 chitin binding domain subfamily co-occuring with family 19 glycosyl hydrolases or with barwin domains. This subfamily includes Hevein, a major IgE-binding allergen in natural rubber latex. ChtBD1 is a lectin domain found in proteins from plants and fungi that bind N-acetylglucosamine, plant endochitinases, wound-induced proteins, and the alpha subunit of Kluyveromyces lactis killer toxin. This domain is involved in the recognition and/or binding of chitin subunits; it typically occurs N-terminal to glycosyl hydrolase domains in chitinases, together with other carbohydrate-binding domains, or by itself in tandem-repeat arrangements. | ||
pfam00182 | Glyco_hydro_19 | 6.0e-122 | 93 | 326 | 234 | + Chitinase class I. | ||
cd00325 | chitinase_glyco_hydro_19 | 3.0e-123 | 94 | 326 | 233 | + Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the procaryotic/eucaryotic divergence. |
Gene Ontology | |
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GO Term | Description |
GO:0004568 | chitinase activity |
GO:0006032 | chitin catabolic process |
GO:0008061 | chitin binding |
GO:0016998 | cell wall macromolecule catabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC16010.1 | 0 | 1 | 332 | 1 | 325 | acidic chitinase [Elaeagnus umbellata] |
GenBank | AAT40738.1 | 0 | 7 | 337 | 8 | 314 | basic chitinase 2-2 [Nepenthes khasiana] |
GenBank | ACN55075.1 | 0 | 1 | 333 | 1 | 316 | chitinase Ib [Chimonanthus praecox] |
DDBJ | BAF47270.1 | 0 | 1 | 339 | 3 | 333 | chitinase C [Ananas comosus] |
Swiss-Prot | Q41596 | 0 | 1 | 341 | 1 | 321 | CHI1_THECC RecName: Full=Endochitinase 1; Flags: Precursor |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3iwr_B | 0 | 24 | 338 | 3 | 304 | A Chain A, Solution Structure Of Dc1 Domain Of Pdi-Like Hypothetical Protein From Arabidopsis Thaliana |
PDB | 3iwr_A | 0 | 24 | 338 | 3 | 304 | A Chain A, Solution Structure Of Dc1 Domain Of Pdi-Like Hypothetical Protein From Arabidopsis Thaliana |
PDB | 2dkv_A | 0 | 24 | 338 | 3 | 304 | A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa L. Japonica |
PDB | 3cql_B | 0 | 90 | 332 | 2 | 242 | A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica Papaya |
PDB | 3cql_A | 0 | 90 | 332 | 2 | 242 | A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica Papaya |