Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.006G016400.1 |
Family | GT5 |
Protein Properties | Length: 757 Molecular Weight: 83894.5 Isoelectric Point: 5.2284 |
Chromosome | Chromosome/Scaffold: 06 Start: 3566614 End: 3571134 |
Description | starch synthase 2 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT5 | 266 | 749 | 0 |
NIILVAAECAPWSKTGGLGDVAGSLPKALARRGHRVMVVAPRYANYADSQDTGVRKRYKVNGQELEVSYFQAYVDGVDFVFMDSPMFQSMQNNIYGGNRL DILKRMVLFCKAAVEVPWHVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMSFTRSVLVIHNIAHQGRGPVEDFSYVDLPEHYMDLFKLYDPI GGDHFNIFAAGLKTADRVVTVSHGYSWELKTAEGGWGLHRIINENDWKLRGIVNGIDTKEWNPQYDIHLKSDGYTNYSLETLQTGKPKCKAALQKELGLP VREDVPLLGFIGRLDQQKGVDLIAEAIPWMIGQDVQLVMLGTGRPDLEQMLRQFENEHRDKVRGWVGFSVKTAHRITAGADILLMPSRFEPCGLNQLYAM NYGTIPVVHAVGGLRDTVQQFNPFEESGVGWTFDSADASKLIHALGNCLLTYRQYKTSWEGLQIRGMKQDLSWDNAAEKYEEVL |
Full Sequence |
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Protein Sequence Length: 757 Download |
MASIGNSCSS PFIIERNGES KAFVFSTFRS RKMKTLGVVN GGVSLFYNKG KQLSRFKPLR 60 VASTGDAVGL GDGDDSENSL QATIEKSKKV LAMQRDLLQQ IAERRKLVSS IKGSVTDQDE 120 DEDEDEDEDF STGDSSLPNP DLTSRSYNRV DVVNNGSIPS SSHVNSTTKN ESKILPSVEV 180 QEKPELYFAP EKASSNNGSI KQSKTIDSKA FKSDVLPSYL SSSKAQVTDE EEESSTEADS 240 KEAAEVDDAA VEDEKPPPLA GVNVMNIILV AAECAPWSKT GGLGDVAGSL PKALARRGHR 300 VMVVAPRYAN YADSQDTGVR KRYKVNGQEL EVSYFQAYVD GVDFVFMDSP MFQSMQNNIY 360 GGNRLDILKR MVLFCKAAVE VPWHVPCGGV CYGDGNLVFI ANDWHTALLP VYLKAYYRDN 420 GLMSFTRSVL VIHNIAHQGR GPVEDFSYVD LPEHYMDLFK LYDPIGGDHF NIFAAGLKTA 480 DRVVTVSHGY SWELKTAEGG WGLHRIINEN DWKLRGIVNG IDTKEWNPQY DIHLKSDGYT 540 NYSLETLQTG KPKCKAALQK ELGLPVREDV PLLGFIGRLD QQKGVDLIAE AIPWMIGQDV 600 QLVMLGTGRP DLEQMLRQFE NEHRDKVRGW VGFSVKTAHR ITAGADILLM PSRFEPCGLN 660 QLYAMNYGTI PVVHAVGGLR DTVQQFNPFE ESGVGWTFDS ADASKLIHAL GNCLLTYRQY 720 KTSWEGLQIR GMKQDLSWDN AAEKYEEVLV AAKYQW* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK14099 | PRK14099 | 1.0e-87 | 265 | 753 | 508 | + glycogen synthase; Provisional | ||
COG0297 | GlgA | 6.0e-137 | 265 | 747 | 498 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
PRK00654 | glgA | 2.0e-167 | 265 | 748 | 490 | + glycogen synthase; Provisional | ||
TIGR02095 | glgA | 0 | 265 | 752 | 492 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 266 | 749 | 490 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF13168.1 | 0 | 1 | 756 | 1 | 751 | AF173900_1 granule bound starch synthase II precursor [Manihot esculenta] |
GenBank | ABV25894.1 | 0 | 1 | 756 | 1 | 751 | starch synthase isoform II [Manihot esculenta] |
RefSeq | XP_002278470.1 | 0 | 1 | 756 | 1 | 772 | PREDICTED: similar to starch synthase [Vitis vinifera] |
RefSeq | XP_002324061.1 | 0 | 1 | 756 | 1 | 742 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002531856.1 | 0 | 1 | 756 | 1 | 754 | starch synthase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vuf_A | 0 | 265 | 750 | 10 | 509 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 3vue_A | 0 | 265 | 750 | 10 | 509 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
PDB | 3d1j_A | 0 | 265 | 748 | 1 | 472 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 3guh_A | 0 | 265 | 755 | 1 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4u_A | 0 | 265 | 755 | 1 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO777841 | 319 | 439 | 757 | 0 |
HO777841 | 392 | 62 | 447 | 0 |
HO781048 | 394 | 364 | 757 | 0 |
HO445868 | 438 | 320 | 757 | 0 |
HO781048 | 41 | 324 | 364 | 0.32 |
Sequence Alignments (This image is cropped. Click for full image.) |
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