Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.006G023900.1 |
Family | GH28 |
Protein Properties | Length: 418 Molecular Weight: 46087.9 Isoelectric Point: 7.3932 |
Chromosome | Chromosome/Scaffold: 06 Start: 6253436 End: 6255702 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 62 | 397 | 0 |
ACDSSAPSPTFLVPRGKTYLLQPLTFNGKHCNSNNITLQVDGRIIAPTKPSAWECETNCNHWIGFENFDGLHIQGSGTINGQGDKWWKLSCKDNEKSCQH RKPTGFMIGHSKNVDIKGLTFEDSPQMHIAFESSTLIHATELTIRAPGHSPNTDGIHIQRSTNVSIDNSTIQTGDDCISIGNESKYINISNIECGPGHGI SIGSLGIMGKTEEVEFVHVRNVTFHGTTNGVRIKTWQGGHGHARNIKFEDITSHSSTRPTVIDQYYCPHKQCKNQTSAVEISNIAYENINGTSPKEIAVQ LSCSESVPCKNITMKDINLIYEKHKDKTSSYCLNAR |
Full Sequence |
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Protein Sequence Length: 418 Download |
MATSKILLLL LLIQCIVFIG SSRQLKNTNI NIDNTFNVIN FGAIGDGQKD DSKMFKHAWD 60 AACDSSAPSP TFLVPRGKTY LLQPLTFNGK HCNSNNITLQ VDGRIIAPTK PSAWECETNC 120 NHWIGFENFD GLHIQGSGTI NGQGDKWWKL SCKDNEKSCQ HRKPTGFMIG HSKNVDIKGL 180 TFEDSPQMHI AFESSTLIHA TELTIRAPGH SPNTDGIHIQ RSTNVSIDNS TIQTGDDCIS 240 IGNESKYINI SNIECGPGHG ISIGSLGIMG KTEEVEFVHV RNVTFHGTTN GVRIKTWQGG 300 HGHARNIKFE DITSHSSTRP TVIDQYYCPH KQCKNQTSAV EISNIAYENI NGTSPKEIAV 360 QLSCSESVPC KNITMKDINL IYEKHKDKTS SYCLNARGLR NGRVHPSVSC LQEEDNF* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 3.0e-94 | 19 | 409 | 393 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 9.0e-95 | 63 | 396 | 334 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03010 | PLN03010 | 5.0e-98 | 36 | 398 | 364 | + polygalacturonase | ||
PLN02188 | PLN02188 | 4.0e-98 | 31 | 397 | 370 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 1.0e-114 | 23 | 417 | 397 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB10216.1 | 0 | 1 | 414 | 1 | 409 | polygalacturonase-like protein [Arabidopsis thaliana] |
EMBL | CBI15273.1 | 0 | 34 | 414 | 24 | 391 | unnamed protein product [Vitis vinifera] |
EMBL | CBI15274.1 | 0 | 34 | 414 | 24 | 384 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002267133.1 | 0 | 34 | 414 | 24 | 393 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002267182.1 | 0 | 34 | 414 | 24 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-28 | 120 | 380 | 99 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 6e-19 | 124 | 390 | 53 | 329 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 6e-19 | 124 | 390 | 53 | 329 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 6e-19 | 124 | 390 | 53 | 329 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 6e-19 | 124 | 390 | 53 | 329 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |