| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.006G024200.1 |
| Family | GH28 |
| Protein Properties | Length: 430 Molecular Weight: 47818.4 Isoelectric Point: 8.3295 |
| Chromosome | Chromosome/Scaffold: 06 Start: 6275002 End: 6277205 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 61 | 396 | 0 |
| ACDSSAPSPTFLVPRGKTYLLQPLTFNGKHCNSNNITLQIDGRIIAPTKPSAWDCETNCNHWIGFENFDGLHIQGSGTINGQGDKWWKLSCKDNEKSCQH RKPTGFMIGHSKNVDIKGLTFEDSPQMHIAFESSTLIHATELTIRAPGHSPNTDGIHIQRSTNVSIDNSTIQTGDDCISIGNESKYINISNIECGPGHGI SIGSLGIMGKTEEVEFVHVRNVTFHGTTNGVRIKTWQGGHGHARNIKFEDITSHSSTRPTVIDQYYCPHKQCKNQTSAVEISNIAYENINGTSPKEIAVQ LSFSESVPCKNITMKDINLIYEKHKDKTSSYCLNAR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 430 Download |
| MATSKILLLL LLIQCIVFIG SSRQLKNNIN IDNTFNVINF GAIGDGQKDD SKMFKHAWDA 60 ACDSSAPSPT FLVPRGKTYL LQPLTFNGKH CNSNNITLQI DGRIIAPTKP SAWDCETNCN 120 HWIGFENFDG LHIQGSGTIN GQGDKWWKLS CKDNEKSCQH RKPTGFMIGH SKNVDIKGLT 180 FEDSPQMHIA FESSTLIHAT ELTIRAPGHS PNTDGIHIQR STNVSIDNST IQTGDDCISI 240 GNESKYINIS NIECGPGHGI SIGSLGIMGK TEEVEFVHVR NVTFHGTTNG VRIKTWQGGH 300 GHARNIKFED ITSHSSTRPT VIDQYYCPHK QCKNQTSAVE ISNIAYENIN GTSPKEIAVQ 360 LSFSESVPCK NITMKDINLI YEKHKDKTSS YCLNARGLRN GSIQVYLVYK KKIIFRLFFF 420 INKFIVYCL* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 3.0e-91 | 34 | 403 | 372 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-93 | 62 | 395 | 334 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03010 | PLN03010 | 2.0e-96 | 35 | 397 | 364 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 3.0e-97 | 16 | 396 | 384 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02793 | PLN02793 | 5.0e-110 | 35 | 403 | 371 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB10216.1 | 0 | 6 | 408 | 5 | 404 | polygalacturonase-like protein [Arabidopsis thaliana] |
| EMBL | CBI15273.1 | 0 | 33 | 404 | 24 | 382 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI15274.1 | 0 | 33 | 395 | 24 | 365 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267133.1 | 0 | 33 | 395 | 24 | 374 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002267182.1 | 0 | 33 | 404 | 24 | 388 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-27 | 119 | 382 | 99 | 364 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 1e-18 | 124 | 389 | 54 | 329 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 1e-18 | 124 | 389 | 54 | 329 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 1e-18 | 124 | 389 | 54 | 329 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 1e-18 | 124 | 389 | 54 | 329 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
