y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.006G024400.1 |
Family | GH28 |
Protein Properties | Length: 403 Molecular Weight: 44406.9 Isoelectric Point: 8.496 |
Chromosome | Chromosome/Scaffold: 06 Start: 6292096 End: 6294261 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 66 | 394 | 0 |
ACDSSTPSPTFLVPQGKTFLLQLLTFNGKHCNSNNITFQIDGRIIAPTKPSTWECNTNCHHWIGFQNFDGLHIQGSGIINGQGDNWWKLSCKDNQKGFMI GHSKNVDMKGLTFEDSPKMHIAFEDSTSIHATQLTIKAPGNSPNTDGIHIQRSTNVSIHNTTIQTGDDCISVGDGSKYISITNIECGPGHGISIGSLGIM GKTEEVEFVHVRNVSFHGTTNGVRIKTWQGGHGHARNIRFEDITSHASTRPIVIDQYYCPHKQCKNQTTAVEISNIAYENINGTSHKETAVQLSCSESSP CRNITMKNINLRNEKQKGKTSSYCLNAHG |
Full Sequence |
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Protein Sequence Length: 403 Download |
MATLKIFFFV LLIQCTVFTG SSRQLKKSNI NIDSYGDNTF NVISFGAIGD GKKDDSKGFK 60 RAWDAACDSS TPSPTFLVPQ GKTFLLQLLT FNGKHCNSNN ITFQIDGRII APTKPSTWEC 120 NTNCHHWIGF QNFDGLHIQG SGIINGQGDN WWKLSCKDNQ KGFMIGHSKN VDMKGLTFED 180 SPKMHIAFED STSIHATQLT IKAPGNSPNT DGIHIQRSTN VSIHNTTIQT GDDCISVGDG 240 SKYISITNIE CGPGHGISIG SLGIMGKTEE VEFVHVRNVS FHGTTNGVRI KTWQGGHGHA 300 RNIRFEDITS HASTRPIVID QYYCPHKQCK NQTTAVEISN IAYENINGTS HKETAVQLSC 360 SESSPCRNIT MKNINLRNEK QKGKTSSYCL NAHGLRNGRV HPN 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-84 | 39 | 402 | 374 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 1.0e-88 | 4 | 392 | 399 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 1.0e-88 | 35 | 394 | 361 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-92 | 67 | 393 | 333 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 3.0e-99 | 40 | 402 | 373 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB10216.1 | 0 | 6 | 402 | 5 | 401 | polygalacturonase-like protein [Arabidopsis thaliana] |
EMBL | CBI15273.1 | 0 | 38 | 403 | 24 | 384 | unnamed protein product [Vitis vinifera] |
EMBL | CBI15274.1 | 0 | 38 | 403 | 24 | 377 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002267133.1 | 0 | 38 | 403 | 24 | 386 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002267182.1 | 0 | 38 | 403 | 24 | 390 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-27 | 124 | 379 | 99 | 364 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 9e-21 | 143 | 392 | 79 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 9e-21 | 143 | 392 | 79 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 9e-21 | 143 | 392 | 79 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 9e-21 | 143 | 392 | 79 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |