Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.006G024800.1 |
Family | PL1 |
Protein Properties | Length: 455 Molecular Weight: 51918.3 Isoelectric Point: 9.1548 |
Chromosome | Chromosome/Scaffold: 06 Start: 6326014 End: 6327997 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 167 | 371 | 0 |
QKRPLWIIFARTMHIKLSQELIVQSNKTIDGRGADVHIAYGCGITLQFVHNVIIHNIHIHHIFPSSGGLIRDSEDHFGFRTVGDGDGISIFGSSNIWLDH ISMSEGQDGLIDAIQGSTAITISNCHFTHHNDVMLFGASDAYSKDQFMQVTIAFNHFGKELIQRMPRCRWGFFHVVNNDYTHWKMYAIGGSMHPTIISQG NRFIA |
Full Sequence |
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Protein Sequence Length: 455 Download |
MEVTKLRLVF FFSFAFIITR LLANIIEIDD FWKQREQEAW NITLAAYESS PENIINHLNY 60 NVDKVIRKIS ANQTIEFEDD LTNNTRRYLR GKHKKYTGPC MATNPIDSCW RCKKNWAKNR 120 KILAKCVLGF GHKTSGGSNG DYYLVTDNSD DDVLNPKPGT LRHAVIQKRP LWIIFARTMH 180 IKLSQELIVQ SNKTIDGRGA DVHIAYGCGI TLQFVHNVII HNIHIHHIFP SSGGLIRDSE 240 DHFGFRTVGD GDGISIFGSS NIWLDHISMS EGQDGLIDAI QGSTAITISN CHFTHHNDVM 300 LFGASDAYSK DQFMQVTIAF NHFGKELIQR MPRCRWGFFH VVNNDYTHWK MYAIGGSMHP 360 TIISQGNRFI APHDLNAKEV THRIYASESE WKNWVWRSEE DLLMNGAIFR TSGPLSPPDL 420 KFNQKDIIKA KPGTYVRTLT RFAGTLKCKK RIKC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 8.0e-11 | 24 | 89 | 66 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 4.0e-21 | 134 | 369 | 248 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 5.0e-51 | 185 | 369 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-58 | 179 | 372 | 205 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 21 | 454 | 24 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 21 | 454 | 53 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002306040.1 | 0 | 1 | 454 | 1 | 432 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002311599.1 | 0 | 10 | 454 | 1 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 1 | 448 | 4 | 434 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 104 | 446 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 104 | 446 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 8e-20 | 173 | 371 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 1e-16 | 187 | 369 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.0000000000001 | 182 | 369 | 71 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |