Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.006G036300.1 |
Family | PL1 |
Protein Properties | Length: 408 Molecular Weight: 45029.8 Isoelectric Point: 7.8118 |
Chromosome | Chromosome/Scaffold: 06 Start: 9953843 End: 9955534 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 120 | 325 | 0 |
IQDEPLWIIFKRDMVITLKQELLMNSFKTIDGRGASVHISGGPCITIHYVSNIIIHGIHIHDCKPGGSTIIRDSPHHAGHWTPSDGDGVSIFGSKNIWVD HCSLSNCHDGLIDVIHGSTAVTISNNYMTHHDKVMLLGHSDSYMQDKNMQVTVAFNHFGEGLIQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQ GNRFLA |
Full Sequence |
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Protein Sequence Length: 408 Download |
MGSSTFSYIF HILFISLLVP NLASSSPVQD PEFVVDEVHK SINASRRNLG YLSCGTGNPI 60 DDCWRCDPNW EKNRQRLADC AIGFGKHAMG GKNGRIYVIT DAGDDDPVNP RPGTLRHAVI 120 QDEPLWIIFK RDMVITLKQE LLMNSFKTID GRGASVHISG GPCITIHYVS NIIIHGIHIH 180 DCKPGGSTII RDSPHHAGHW TPSDGDGVSI FGSKNIWVDH CSLSNCHDGL IDVIHGSTAV 240 TISNNYMTHH DKVMLLGHSD SYMQDKNMQV TVAFNHFGEG LIQRMPRCRL GYFHVVNNDY 300 THWEMYAIGG SANPTINSQG NRFLAPNDRS KKEVTKHENA PESEWKRWNW RSEGDLMLNG 360 AFFRQTGASG ASSTFARASS LSARPSSLVG TMTMTAGALK CRRGSHC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-28 | 90 | 323 | 252 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 6.0e-74 | 138 | 323 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 7.0e-83 | 132 | 327 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF63756.1 | 0 | 22 | 407 | 14 | 398 | AF243475_1 pectate lyase [Vitis vinifera] |
RefSeq | XP_002268976.1 | 0 | 22 | 407 | 19 | 403 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002300069.1 | 0 | 9 | 407 | 6 | 403 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002322215.1 | 0 | 19 | 407 | 16 | 403 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526952.1 | 0 | 9 | 407 | 7 | 396 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 58 | 399 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 58 | 399 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-18 | 127 | 325 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 2e-17 | 141 | 323 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.000000000000001 | 138 | 330 | 73 | 283 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |