| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.006G076800.1 |
| Family | GH28 |
| Protein Properties | Length: 421 Molecular Weight: 45062.6 Isoelectric Point: 5.391 |
| Chromosome | Chromosome/Scaffold: 06 Start: 30075645 End: 30077758 |
| Description | polygalacturonase 4 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 76 | 408 | 0 |
| KEACNHNGRAMLVIPEGNFVVGSMLLSGPCTFQPPLMVQFAGNLLPQGSTVAAENADWITFMNFNGLFISGKGIINGQGEKKAWNSVCDGCRRQSASLKL IKLNDVLISGITSVNPKGFHMMISVCSNFVITNVNISAPDESPNTDGIHMSKTNKVRISDSIIGTGDDCVSMIHGTTNVTIENVKCGPGHGFSIGSLGHY EDEFDVFGITVRNCSLSHTENGARIKTYRNESPSKASGIIFQDLIMDNVKNPILIDQEYATIKGSVDSKVLISDVEFSNIRGTTISKIAIVLACSPTFPC QGITLKDIHLEYSGPPDHNEDTPFSSNCTNVKV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 421 Download |
| MASMRLLAII AILVQGLVIG DSQELPSFDP ELAVAKVLEV AEGKVGPDVK IFNVVDFGAK 60 PDGATTSTIN FIRAFKEACN HNGRAMLVIP EGNFVVGSML LSGPCTFQPP LMVQFAGNLL 120 PQGSTVAAEN ADWITFMNFN GLFISGKGII NGQGEKKAWN SVCDGCRRQS ASLKLIKLND 180 VLISGITSVN PKGFHMMISV CSNFVITNVN ISAPDESPNT DGIHMSKTNK VRISDSIIGT 240 GDDCVSMIHG TTNVTIENVK CGPGHGFSIG SLGHYEDEFD VFGITVRNCS LSHTENGARI 300 KTYRNESPSK ASGIIFQDLI MDNVKNPILI DQEYATIKGS VDSKVLISDV EFSNIRGTTI 360 SKIAIVLACS PTFPCQGITL KDIHLEYSGP PDHNEDTPFS SNCTNVKVNY IGEQMPPPCA 420 * 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 1.0e-72 | 51 | 419 | 375 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 2.0e-77 | 50 | 419 | 388 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-78 | 87 | 408 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 1.0e-79 | 53 | 416 | 375 | + polygalacturonase ADPG | ||
| PLN02188 | PLN02188 | 9.0e-116 | 46 | 420 | 386 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002272193.1 | 0 | 1 | 419 | 1 | 426 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002314372.1 | 0 | 47 | 419 | 44 | 409 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002315493.1 | 0 | 57 | 419 | 19 | 374 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002334010.1 | 0 | 47 | 419 | 42 | 407 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002516967.1 | 0 | 44 | 419 | 44 | 411 | Exopolygalacturonase clone GBGE184 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 4e-17 | 144 | 385 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 0.00000000000007 | 42 | 385 | 3 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1nhc_F | 0.0000000000007 | 149 | 403 | 79 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.0000000000007 | 149 | 403 | 79 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.0000000000007 | 149 | 403 | 79 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
