| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.006G077400.2 |
| Family | GH28 |
| Protein Properties | Length: 313 Molecular Weight: 34224.5 Isoelectric Point: 4.2067 |
| Chromosome | Chromosome/Scaffold: 06 Start: 30177970 End: 30181264 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 3 | 276 | 0 |
| RDVVITGDNGTIDGQGSVWWEWFTSHSLNYTRPHLVEFVSSEYVLVSNISLLNAPAYNIHPVYCSNVHIHNISVYAPPESPYTVGIVPDSSDNICIEDCN ISMGHDAIAFKSGWDEYGIAYGRPTTIAHVRRVDLRSSTGSSLAFGSEMSGGISDILVEEVHLYDSLTGIEFRTTIGRGGYIKEIMISDVDLLNVNTSFA AIGDYGSHPDDKFDPDAFPVLEKITLQNIIGTNITIAGNFKGIEESPFTFICLSNISLSINSTSLSPWQCSYVS | |||
| Full Sequence |
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| Protein Sequence Length: 313 Download |
| MLRDVVITGD NGTIDGQGSV WWEWFTSHSL NYTRPHLVEF VSSEYVLVSN ISLLNAPAYN 60 IHPVYCSNVH IHNISVYAPP ESPYTVGIVP DSSDNICIED CNISMGHDAI AFKSGWDEYG 120 IAYGRPTTIA HVRRVDLRSS TGSSLAFGSE MSGGISDILV EEVHLYDSLT GIEFRTTIGR 180 GGYIKEIMIS DVDLLNVNTS FAAIGDYGSH PDDKFDPDAF PVLEKITLQN IIGTNITIAG 240 NFKGIEESPF TFICLSNISL SINSTSLSPW QCSYVSGFSE SVFPEPCPEL MNSSTSSCGI 300 LMLELQFYNI IL* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 1.0e-12 | 11 | 197 | 191 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 5.0e-15 | 9 | 207 | 208 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 2.0e-18 | 5 | 197 | 197 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-19 | 4 | 197 | 199 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 5.0e-27 | 4 | 211 | 217 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI22951.1 | 0 | 1 | 288 | 141 | 428 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002273305.1 | 0 | 1 | 288 | 143 | 430 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002314352.1 | 0 | 1 | 297 | 141 | 435 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002328589.1 | 0 | 1 | 294 | 143 | 435 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002516982.1 | 0 | 2 | 303 | 142 | 444 | Polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 2e-22 | 31 | 257 | 186 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 2e-22 | 31 | 257 | 186 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 2e-22 | 31 | 257 | 186 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 2e-22 | 31 | 257 | 186 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.000000000002 | 12 | 197 | 117 | 304 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO797483 | 301 | 1 | 298 | 0 |
| CV713222 | 229 | 1 | 229 | 0 |
| JG465096 | 228 | 2 | 229 | 0 |
| EY698033 | 234 | 1 | 229 | 0 |
| FG534264 | 214 | 2 | 215 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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