| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.006G077400.3 |
| Family | GH28 |
| Protein Properties | Length: 321 Molecular Weight: 35121.5 Isoelectric Point: 4.1315 |
| Chromosome | Chromosome/Scaffold: 06 Start: 30179516 End: 30181264 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 17 | 284 | 0 |
| GDNGTIDGQGSVWWEWFTSHSLNYTRPHLVEFVSSEYVLVSNISLLNAPAYNIHPVYCSNVHIHNISVYAPPESPYTVGIVPDSSDNICIEDCNISMGHD AIAFKSGWDEYGIAYGRPTTIAHVRRVDLRSSTGSSLAFGSEMSGGISDILVEEVHLYDSLTGIEFRTTIGRGGYIKEIMISDVDLLNVNTSFAAIGDYG SHPDDKFDPDAFPVLEKITLQNIIGTNITIAGNFKGIEESPFTFICLSNISLSINSTSLSPWQCSYVS | |||
| Full Sequence |
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| Protein Sequence Length: 321 Download |
| MILVESWINL DLNVALGDNG TIDGQGSVWW EWFTSHSLNY TRPHLVEFVS SEYVLVSNIS 60 LLNAPAYNIH PVYCSNVHIH NISVYAPPES PYTVGIVPDS SDNICIEDCN ISMGHDAIAF 120 KSGWDEYGIA YGRPTTIAHV RRVDLRSSTG SSLAFGSEMS GGISDILVEE VHLYDSLTGI 180 EFRTTIGRGG YIKEIMISDV DLLNVNTSFA AIGDYGSHPD DKFDPDAFPV LEKITLQNII 240 GTNITIAGNF KGIEESPFTF ICLSNISLSI NSTSLSPWQC SYVSGFSESV FPEPCPELMN 300 SSTSSCGILM LELQFYNIIL * 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 2.0e-12 | 19 | 205 | 191 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 4.0e-16 | 4 | 215 | 225 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 1.0e-17 | 19 | 205 | 191 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-20 | 13 | 205 | 198 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 1.0e-27 | 5 | 219 | 224 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI22951.1 | 0 | 14 | 296 | 146 | 428 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002273305.1 | 0 | 14 | 296 | 148 | 430 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002314352.1 | 0 | 14 | 305 | 146 | 435 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002328589.1 | 0 | 5 | 302 | 136 | 435 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002516982.1 | 0 | 14 | 311 | 146 | 444 | Polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 2e-22 | 39 | 265 | 186 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 2e-22 | 39 | 265 | 186 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 2e-22 | 39 | 265 | 186 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 2e-22 | 39 | 265 | 186 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.000000000002 | 20 | 205 | 117 | 304 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO797483 | 296 | 14 | 306 | 0 |
| CV713222 | 235 | 3 | 237 | 0 |
| JG465096 | 229 | 9 | 237 | 0 |
| CU494711 | 225 | 81 | 305 | 0 |
| EY698033 | 240 | 3 | 237 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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