| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.006G137600.2 |
| Family | GH28 |
| Protein Properties | Length: 461 Molecular Weight: 50112.1 Isoelectric Point: 5.6761 |
| Chromosome | Chromosome/Scaffold: 06 Start: 39384884 End: 39387689 |
| Description | polygalacturonase abscission zone A. thaliana |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 115 | 449 | 0 |
| EEACSSKGEVVLEVPQGQRYQLKPIRFSGPCNSNLTIQIYGSMEASDDMSDYKEDTKHWLIFDSINNLLIEGGGTGNINGNGKIWWQNSCKINKTLPCKD APTALTFYHSKNLKVQNLNIQDAQQIHVSFEKCNGVQASGLTVAAPESSPNTDGIHVTRTQNIWITNSVIGTGDDCISIVSGSKNVQAMDITCGPGHGIS IGSLGSKSSKAYVSGVTVDGAKLSGTTNGVRIKTWQGGSGSASNILFQNIEMNNVSNPIIIDQNYCDQDKPCKEQSSAVQVKDVVYKNINGTSASEVAIK FDCSKTHPCQEILLQNVKLQEQGDRTAKAICNNVK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 461 Download |
| MDGQTRQVVV LYFITIFSLF SRYNSLEKDP PPPSYNYFED LVSAGYDPQA YPSYFTTTID 60 DGHFKDLISQ RTQVISQLQK LGVTSAPSTK TVNVNDFGAT GDATQDTQAF EKAWEEACSS 120 KGEVVLEVPQ GQRYQLKPIR FSGPCNSNLT IQIYGSMEAS DDMSDYKEDT KHWLIFDSIN 180 NLLIEGGGTG NINGNGKIWW QNSCKINKTL PCKDAPTALT FYHSKNLKVQ NLNIQDAQQI 240 HVSFEKCNGV QASGLTVAAP ESSPNTDGIH VTRTQNIWIT NSVIGTGDDC ISIVSGSKNV 300 QAMDITCGPG HGISIGSLGS KSSKAYVSGV TVDGAKLSGT TNGVRIKTWQ GGSGSASNIL 360 FQNIEMNNVS NPIIIDQNYC DQDKPCKEQS SAVQVKDVVY KNINGTSASE VAIKFDCSKT 420 HPCQEILLQN VKLQEQGDRT AKAICNNVKL TEKGTVFPQC * 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 2.0e-74 | 88 | 449 | 369 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 6.0e-91 | 88 | 458 | 377 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 8.0e-106 | 118 | 449 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 3.0e-119 | 79 | 458 | 383 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 2.0e-151 | 60 | 460 | 403 | + polygalacturonase ADPG | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF71160.1 | 0 | 10 | 460 | 11 | 455 | AF152758_1 polygalacturonase A [Actinidia chinensis] |
| Swiss-Prot | P35336 | 0 | 10 | 460 | 11 | 455 | PGLR_ACTDE RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
| RefSeq | XP_002308956.1 | 0 | 14 | 460 | 1 | 442 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002322711.1 | 0 | 33 | 460 | 29 | 452 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002529616.1 | 0 | 49 | 460 | 63 | 473 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-27 | 188 | 433 | 115 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 5e-19 | 192 | 448 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 5e-19 | 192 | 448 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 5e-19 | 192 | 448 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 5e-19 | 192 | 448 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| JG857974 | 173 | 6 | 178 | 0 |
| EH756941 | 253 | 208 | 460 | 0 |
| BU888780 | 229 | 232 | 460 | 0 |
| EH767961 | 248 | 213 | 460 | 0 |
| DN495824 | 230 | 231 | 460 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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