| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.006G137600.5 |
| Family | GH28 |
| Protein Properties | Length: 305 Molecular Weight: 32716.7 Isoelectric Point: 6.7499 |
| Chromosome | Chromosome/Scaffold: 06 Start: 39384884 End: 39387329 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 8 | 293 | 0 |
| SDYKEDTKHWLIFDSINNLLIEGGGTGNINGNGKIWWQNSCKINKTLPCKDAPTALTFYHSKNLKVQNLNIQDAQQIHVSFEKCNGVQASGLTVAAPESS PNTDGIHVTRTQNIWITNSVIGTGDDCISIVSGSKNVQAMDITCGPGHGISIGSLGSKSSKAYVSGVTVDGAKLSGTTNGVRIKTWQGGSGSASNILFQN IEMNNVSNPIIIDQNYCDQDKPCKEQSSAVQVKDVVYKNINGTSASEVAIKFDCSKTHPCQEILLQNVKLQEQGDRTAKAICNNVK | |||
| Full Sequence |
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| Protein Sequence Length: 305 Download |
| MEASDDMSDY KEDTKHWLIF DSINNLLIEG GGTGNINGNG KIWWQNSCKI NKTLPCKDAP 60 TALTFYHSKN LKVQNLNIQD AQQIHVSFEK CNGVQASGLT VAAPESSPNT DGIHVTRTQN 120 IWITNSVIGT GDDCISIVSG SKNVQAMDIT CGPGHGISIG SLGSKSSKAY VSGVTVDGAK 180 LSGTTNGVRI KTWQGGSGSA SNILFQNIEM NNVSNPIIID QNYCDQDKPC KEQSSAVQVK 240 DVVYKNINGT SASEVAIKFD CSKTHPCQEI LLQNVKLQEQ GDRTAKAICN NVKLTEKGTV 300 FPQC* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 2.0e-55 | 43 | 293 | 256 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 4.0e-70 | 43 | 302 | 263 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-91 | 41 | 293 | 253 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 2.0e-94 | 43 | 302 | 260 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 4.0e-116 | 1 | 304 | 304 | + polygalacturonase ADPG | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF71160.1 | 0 | 1 | 304 | 154 | 455 | AF152758_1 polygalacturonase A [Actinidia chinensis] |
| Swiss-Prot | P35336 | 0 | 1 | 304 | 154 | 455 | PGLR_ACTDE RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
| RefSeq | XP_002308956.1 | 0 | 1 | 304 | 141 | 442 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002322711.1 | 0 | 1 | 304 | 151 | 452 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002529616.1 | 0 | 1 | 304 | 171 | 473 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 3e-28 | 32 | 277 | 115 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 1e-19 | 36 | 292 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 1e-19 | 36 | 292 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 1e-19 | 36 | 292 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 1e-19 | 36 | 292 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EH756941 | 253 | 52 | 304 | 0 |
| BU888780 | 229 | 76 | 304 | 0 |
| EH767961 | 248 | 57 | 304 | 0 |
| DN495824 | 230 | 75 | 304 | 0 |
| EE091344 | 245 | 41 | 285 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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