| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.006G139700.1 |
| Family | GH28 |
| Protein Properties | Length: 475 Molecular Weight: 52448 Isoelectric Point: 6.3458 |
| Chromosome | Chromosome/Scaffold: 06 Start: 39671087 End: 39673837 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 57 | 385 | 0 |
| DSCRTKPCYVTFPTGTYLTATIFLKSNVILDIPKGSTILGGTKLEDYPKEFDRWYVILAENARDVGITGGGVVDGQGLEFVVKFDERKNVMVSWNQTGAC SGDECRPRLVGFLDSTNVRVWNVTFRQPAYWCLHIVRCENTSIHDVSIYGDFNTPNNDGIDIEDSNNTVITRCHIDTGDDAICPKTYTSPLYNLTATNSW IRTKSSAIKLGSASWFELNNLVFDNITIVDSHRGLALQIRDGGNVSDITFSNINISTRYYDPSWWGRAEPIYVTTCPRHSDSSEGSISNLNFVNISAVSE NGIFLSGSKGGLLRNLRFININLTYKRWT | |||
| Full Sequence |
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| Protein Sequence Length: 475 Download |
| MGGGAAAAPI PRLTAITFLF LLPIVIQSHT PTISVRDFGA TGDGKHYDTA AIQSAIDSCR 60 TKPCYVTFPT GTYLTATIFL KSNVILDIPK GSTILGGTKL EDYPKEFDRW YVILAENARD 120 VGITGGGVVD GQGLEFVVKF DERKNVMVSW NQTGACSGDE CRPRLVGFLD STNVRVWNVT 180 FRQPAYWCLH IVRCENTSIH DVSIYGDFNT PNNDGIDIED SNNTVITRCH IDTGDDAICP 240 KTYTSPLYNL TATNSWIRTK SSAIKLGSAS WFELNNLVFD NITIVDSHRG LALQIRDGGN 300 VSDITFSNIN ISTRYYDPSW WGRAEPIYVT TCPRHSDSSE GSISNLNFVN ISAVSENGIF 360 LSGSKGGLLR NLRFININLT YKRWTKYMGG LVDYRPGCQG LVNHSTAGII MEHIDGLDVE 420 NVNMRWFDGR TVQWDNPLDF RPSTVNNISL LNFHSGVYKQ GRGSSEQIPL FGSN* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-9 | 149 | 366 | 238 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| pfam12708 | Pectate_lyase_3 | 9.0e-10 | 33 | 281 | 253 | + Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28. | ||
| PLN02218 | PLN02218 | 9.0e-11 | 32 | 365 | 369 | + polygalacturonase ADPG | ||
| COG5434 | PGU1 | 5.0e-38 | 23 | 309 | 325 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB41176.1 | 0 | 32 | 474 | 34 | 487 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_567055.1 | 0 | 24 | 460 | 26 | 473 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002282920.1 | 0 | 13 | 456 | 5 | 465 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002282925.1 | 0 | 13 | 456 | 5 | 460 | PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] |
| RefSeq | XP_002322693.1 | 0 | 24 | 460 | 3 | 444 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2uvf_B | 6e-21 | 33 | 308 | 157 | 484 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 2uvf_A | 6e-21 | 33 | 308 | 157 | 484 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 2uve_B | 6e-21 | 33 | 308 | 157 | 484 | A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase |
| PDB | 2uve_A | 6e-21 | 33 | 308 | 157 | 484 | A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase |
| PDB | 3jur_D | 3e-18 | 33 | 306 | 28 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
