| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.006G160500.1 |
| Family | CE8 |
| Protein Properties | Length: 409 Molecular Weight: 45569.4 Isoelectric Point: 8.9102 |
| Chromosome | Chromosome/Scaffold: 06 Start: 41998159 End: 42001096 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 113 | 401 | 0 |
| TVDLEGCGNFSSAQKAIDAVPDSSPSKTLIIIYSGTYREKVVVHASKSNLIIQGEGFLNTVIEWNDTATSTGGTVYSSSVAIFASNFTAYNISFKNTAPE PIPGETGKQAVALRIAGDQAAFYNCGFYGAQDTLLDDRGRHYFKGCFIQGSIDIIFGNARSLYQGCVIHSIAKEGTSGVSGSVTAHARQSLNEQTGFSFV NCIVRGTGSVWLGRAWGAYATVVFSRSYMSDVVAPVGWNDWRDPSRDQTVFFGEYECLGPGANYTFRASYGKQLMEYEAAHYMNISYID | |||
| Full Sequence |
|---|
| Protein Sequence Length: 409 Download |
| MRLKTNSIWL FAFLFALFSI LISLYTLPPS SQATISMKFE ASFVKKVVSQ SGEFISLLTR 60 MVSRHHHHHR HRRRHHHHHH RRGREHKCDH IKWRSSLSTS SLIYQYKVSL VLTVDLEGCG 120 NFSSAQKAID AVPDSSPSKT LIIIYSGTYR EKVVVHASKS NLIIQGEGFL NTVIEWNDTA 180 TSTGGTVYSS SVAIFASNFT AYNISFKNTA PEPIPGETGK QAVALRIAGD QAAFYNCGFY 240 GAQDTLLDDR GRHYFKGCFI QGSIDIIFGN ARSLYQGCVI HSIAKEGTSG VSGSVTAHAR 300 QSLNEQTGFS FVNCIVRGTG SVWLGRAWGA YATVVFSRSY MSDVVAPVGW NDWRDPSRDQ 360 TVFFGEYECL GPGANYTFRA SYGKQLMEYE AAHYMNISYI DGDQWLQD* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02671 | PLN02671 | 7.0e-96 | 104 | 407 | 312 | + pectinesterase |
| PLN02665 | PLN02665 | 5.0e-97 | 111 | 406 | 297 | + pectinesterase family protein |
| PLN02634 | PLN02634 | 1.0e-102 | 110 | 406 | 305 | + probable pectinesterase |
| PLN02682 | PLN02682 | 9.0e-119 | 104 | 407 | 311 | + pectinesterase family protein |
| PLN02304 | PLN02304 | 3.0e-137 | 111 | 407 | 300 | + probable pectinesterase |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI30191.1 | 0 | 30 | 406 | 30 | 399 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_181209.1 | 0 | 99 | 407 | 78 | 386 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002264941.1 | 0 | 111 | 406 | 14 | 309 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002326223.1 | 0 | 99 | 406 | 6 | 313 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002519425.1 | 0 | 29 | 408 | 31 | 369 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 1.4013e-45 | 112 | 407 | 9 | 309 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 2e-38 | 114 | 407 | 7 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 8e-16 | 122 | 394 | 18 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 8e-16 | 122 | 394 | 18 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 8e-16 | 122 | 394 | 18 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
