| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.006G176400.1 |
| Family | PL1 |
| Protein Properties | Length: 370 Molecular Weight: 41480.8 Isoelectric Point: 7.9668 |
| Chromosome | Chromosome/Scaffold: 06 Start: 43446936 End: 43449512 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 101 | 280 | 0 |
| IVFEVSGTIHLSSTLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIVCNLEFEGGRGPDVDGIQIKPNSKHIWIDRCSLHDYDDGLIDITRGSTDITVSR CHFAQHDKTMLIGADPSHVGDRCIRVTIHHCFFDGTRQRHPRVRYGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEA | |||
| Full Sequence |
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| Protein Sequence Length: 370 Download |
| MGNAHPHRKH RNHHHHPTPT PPYYISPQPY VPSYMPQPHM PHSLPYLNVD SSLRALAGQA 60 EGFGRFAIGG LHGPIYHVTT LSDDGPGSLR DGCRRKEPLW IVFEVSGTIH LSSTLSVSSY 120 KTIDGRGQRI KLTGKGLRLK ECEHVIVCNL EFEGGRGPDV DGIQIKPNSK HIWIDRCSLH 180 DYDDGLIDIT RGSTDITVSR CHFAQHDKTM LIGADPSHVG DRCIRVTIHH CFFDGTRQRH 240 PRVRYGKVHL YNNYTRNWGI YAVCASVESQ IYSQCNIYEA GQKKVAFKYL HEKAADKDEA 300 CSGCIRSEGD LFMTGTQAGL LTENVMSNMF HPSEYYPTWT VEPPSEALKH IVQQFTGWQS 360 VPRPAEASS* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00544 | Pec_lyase_C | 2.0e-39 | 96 | 276 | 201 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 1.0e-48 | 69 | 354 | 305 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 1.0e-68 | 105 | 281 | 189 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK93648.1 | 0 | 1 | 366 | 1 | 380 | unknown [Populus trichocarpa] |
| GenBank | ABK96132.1 | 0 | 1 | 366 | 1 | 383 | unknown [Populus trichocarpa] |
| EMBL | CBI32661.1 | 0 | 44 | 369 | 4 | 327 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002277576.1 | 0 | 1 | 369 | 1 | 371 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002309435.1 | 0 | 40 | 366 | 1 | 327 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 2.99878e-43 | 48 | 336 | 13 | 327 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 2.99878e-43 | 48 | 336 | 13 | 327 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 8e-26 | 68 | 278 | 22 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 3e-25 | 117 | 278 | 130 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmw_A | 3e-21 | 122 | 279 | 82 | 247 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DY275282 | 326 | 43 | 367 | 0 |
| DT548594 | 257 | 23 | 279 | 0 |
| DY289690 | 316 | 32 | 343 | 0 |
| DY277275 | 310 | 44 | 353 | 0 |
| DY978143 | 293 | 35 | 321 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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