| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.006G186600.1 |
| Family | GH28 |
| Protein Properties | Length: 394 Molecular Weight: 41578.9 Isoelectric Point: 7.071 |
| Chromosome | Chromosome/Scaffold: 06 Start: 44363049 End: 44364677 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 53 | 382 | 0 |
| TLACGSINPATIYVPPGRFLVRNVVFRGQCKNNGIVFRIDGTLVAPSDYKVIGSTGNWLLFEHVNGVSIYGGIIDGQGTGLWTCKRSGKGCPSGATSLGF SNSRNIVIRGLTSLNSQMYHIVINGCNNVKVEGVRVSASGNSPNTDGIHVQSSSGVTILNTRIGTGDDCVSVGPGTNNLWIEKVACGPGHGISIGSLGKE VEEAGVQNVTVKTVAFTGTENGVRIKSWGRQSSGFARNILFQHAVMTDVQNPIVIDQHYCPDEKNCPGQVSGVKISDVTYQDIHGTSATEVAVKFDCSSE YPCSNIKLEDVKLTYRNKAAEASCSNADGT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 394 Download |
| MEQAAKSIVF LAFVLLFFAS SGVADPLTYN VLNYGAKPDD NFDSTQALVA AWTLACGSIN 60 PATIYVPPGR FLVRNVVFRG QCKNNGIVFR IDGTLVAPSD YKVIGSTGNW LLFEHVNGVS 120 IYGGIIDGQG TGLWTCKRSG KGCPSGATSL GFSNSRNIVI RGLTSLNSQM YHIVINGCNN 180 VKVEGVRVSA SGNSPNTDGI HVQSSSGVTI LNTRIGTGDD CVSVGPGTNN LWIEKVACGP 240 GHGISIGSLG KEVEEAGVQN VTVKTVAFTG TENGVRIKSW GRQSSGFARN ILFQHAVMTD 300 VQNPIVIDQH YCPDEKNCPG QVSGVKISDV TYQDIHGTSA TEVAVKFDCS SEYPCSNIKL 360 EDVKLTYRNK AAEASCSNAD GTASGFVQPS SCL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-88 | 56 | 384 | 334 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 6.0e-94 | 31 | 393 | 371 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 2.0e-95 | 26 | 389 | 374 | + polygalacturonase ADPG | ||
| PLN02188 | PLN02188 | 4.0e-111 | 27 | 392 | 372 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 1.0e-139 | 29 | 393 | 366 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC64184.1 | 0 | 6 | 393 | 5 | 393 | endopolygalacturonase [Prunus persica] |
| GenBank | ABC72324.1 | 0 | 6 | 393 | 5 | 393 | endo-polygalacturonase [Prunus persica] |
| GenBank | ABC72325.1 | 0 | 6 | 393 | 5 | 393 | endo-polygalacturonase [Prunus persica] |
| GenBank | ABV32553.1 | 0 | 6 | 393 | 5 | 393 | endopolygalacturonase [Prunus persica] |
| RefSeq | XP_002529090.1 | 0 | 7 | 393 | 8 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 8e-22 | 121 | 366 | 113 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 2e-17 | 28 | 373 | 20 | 346 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1czf_B | 8e-17 | 114 | 384 | 95 | 361 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1czf_A | 8e-17 | 114 | 384 | 95 | 361 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 2iq7_G | 9e-16 | 115 | 378 | 71 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
