Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.006G219800.1 |
Family | PL1 |
Protein Properties | Length: 448 Molecular Weight: 49072.3 Isoelectric Point: 7.602 |
Chromosome | Chromosome/Scaffold: 06 Start: 47213911 End: 47218973 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 161 | 366 | 0 |
IQDEPLWIVFKRDMVIRLKQELIMNSFKTIDGRGVNVHIANGACITIQYVTNVIIHGLHIHDCKPTGNAMVRSSPSHFGWRTMADGDAISIFGSSHIWVD HNSLSNCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQ GNRYAA |
Full Sequence |
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Protein Sequence Length: 448 Download |
MAVSNNWAFA SLALLFLLLV AAMATVRTGN VSSNVETEKV QSSKNSTMAA RSEEVEPLNE 60 HAVPDPEAVA AEVESIIDMN IRNVTERRKL GFFTCGTGNP IDDCWRCDPN WQKNRKRLAD 120 CGIGFGRNAI GGRDGRFYVV TDPNDDDPVN PKPGTLRHAV IQDEPLWIVF KRDMVIRLKQ 180 ELIMNSFKTI DGRGVNVHIA NGACITIQYV TNVIIHGLHI HDCKPTGNAM VRSSPSHFGW 240 RTMADGDAIS IFGSSHIWVD HNSLSNCADG LVDAVMGSTA ITISNNHMTH HNEVMLLGHS 300 DSYTRDKQMQ VTIAYNHFGE GLIQRMPRCR HGYFHVVNND YTHWEMYAIG GSANPTINSQ 360 GNRYAAPTNP FAKEVTKRVD TAEGQWKSWN WRSEGDLLLN GAYFTPSGAG ASASYARASS 420 LGAKSSSMVG AMTSNAGALP CRRGKQC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 1.0e-26 | 186 | 379 | 206 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-70 | 179 | 364 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-79 | 173 | 367 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ADD62392.1 | 0 | 34 | 447 | 35 | 445 | pectase lyase [Prunus persica] |
DDBJ | BAF43573.1 | 0 | 17 | 447 | 1 | 425 | pectate lyase [Prunus persica] |
EMBL | CBI33346.1 | 0 | 1 | 447 | 1 | 430 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002285639.1 | 0 | 1 | 447 | 3 | 432 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002297822.1 | 0 | 1 | 447 | 1 | 450 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 99 | 439 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 99 | 439 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 8e-17 | 168 | 364 | 50 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 0.00000000000004 | 189 | 438 | 90 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 0.00000000000004 | 189 | 438 | 90 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |