Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.006G222300.1 |
Family | CE8 |
Protein Properties | Length: 328 Molecular Weight: 36690.6 Isoelectric Point: 8.766 |
Chromosome | Chromosome/Scaffold: 06 Start: 47469180 End: 47470816 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 32 | 314 | 0 |
FVDQKGRGNYSKIQSAINSIPSNNLYWFCITVSAGTYREKVNIPYDKPYIILKGAGKRKTMVVWNEPYLVSPTFSSSADNIVVQSISFVNSYNSPSSKNP RVPAVAAMLSGDKCVFHKCGFSSVQDTLWDAAGRHYFKDCVIEGAVDFIFGNAQSLYEGSSIRFLGELLEPGIAGFITAQGRENPNDSNGFVFKNCNVYG KGTTYLGRPWRGFSRVLFYNCQFSNIIHPSGWDSWNFVGKEQLITYAEHGNNGPGSDTSKRVKWEKKLDDGTVSKFTSMSYIN |
Full Sequence |
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Protein Sequence Length: 328 Download |
MTLSYCFFYT LTIACLLCFQ HRPAEAQCKT LFVDQKGRGN YSKIQSAINS IPSNNLYWFC 60 ITVSAGTYRE KVNIPYDKPY IILKGAGKRK TMVVWNEPYL VSPTFSSSAD NIVVQSISFV 120 NSYNSPSSKN PRVPAVAAML SGDKCVFHKC GFSSVQDTLW DAAGRHYFKD CVIEGAVDFI 180 FGNAQSLYEG SSIRFLGELL EPGIAGFITA QGRENPNDSN GFVFKNCNVY GKGTTYLGRP 240 WRGFSRVLFY NCQFSNIIHP SGWDSWNFVG KEQLITYAEH GNNGPGSDTS KRVKWEKKLD 300 DGTVSKFTSM SYINSDGWLQ TMPTKYF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02682 | PLN02682 | 2.0e-83 | 28 | 321 | 307 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 2.0e-83 | 24 | 319 | 302 | + pectinesterase family protein | ||
PLN02432 | PLN02432 | 5.0e-84 | 33 | 320 | 290 | + putative pectinesterase | ||
PLN02176 | PLN02176 | 4.0e-99 | 7 | 326 | 332 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 4.0e-170 | 11 | 323 | 321 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI40838.1 | 0 | 9 | 323 | 20 | 341 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_189055.1 | 0 | 4 | 323 | 3 | 332 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002263748.1 | 0 | 30 | 323 | 31 | 328 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002323773.1 | 0 | 31 | 323 | 1 | 288 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518106.1 | 0 | 30 | 323 | 47 | 335 | Pectinesterase U1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xg2_A | 4.00001e-41 | 33 | 326 | 7 | 311 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1gq8_A | 2e-40 | 31 | 320 | 9 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntq_B | 2e-16 | 41 | 323 | 18 | 342 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntq_A | 2e-16 | 41 | 323 | 18 | 342 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntp_B | 2e-16 | 41 | 323 | 18 | 342 | A Chain A, Pectin Methylesterase From Carrot |