| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.006G260100.1 |
| Family | GH28 |
| Protein Properties | Length: 401 Molecular Weight: 43602.1 Isoelectric Point: 6.5557 |
| Chromosome | Chromosome/Scaffold: 06 Start: 50099907 End: 50102801 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 15 | 361 | 0 |
| DKGGAQLYVPPGRWLTGSFNLTSHLTLFLEKGAVILGSQDPSHWDIVEPLPSYGRGIELPGRRYRSLVNGYMLRDVVITGDNGTIDGQGSVWWEWFTSHS LNYTRPHLVEFVSSKDVHISNITFLNAPAYNIHPVYCSNVHIHNVSVYAPPGSPYTVGIVPDSSDNVCIEDCNISTGHDAIALKSGWDEYGIAYGRPTTN VHIRSVHLQSSTGSSLAFGSEMSGGISNVQVEHVHLYNSFTGIQFRTTKGRGGYLREIIISDANMLNINTAFSAIGDYGSHPDDKFNPDAFPSLEKITLH DIIGKNIIMAGNFSGIQQAPFTSMCLFNISLSMSSAFSSCWSCSNVS | |||
| Full Sequence |
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| Protein Sequence Length: 401 Download |
| MAFQNAIFYL KSFADKGGAQ LYVPPGRWLT GSFNLTSHLT LFLEKGAVIL GSQDPSHWDI 60 VEPLPSYGRG IELPGRRYRS LVNGYMLRDV VITGDNGTID GQGSVWWEWF TSHSLNYTRP 120 HLVEFVSSKD VHISNITFLN APAYNIHPVY CSNVHIHNVS VYAPPGSPYT VGIVPDSSDN 180 VCIEDCNIST GHDAIALKSG WDEYGIAYGR PTTNVHIRSV HLQSSTGSSL AFGSEMSGGI 240 SNVQVEHVHL YNSFTGIQFR TTKGRGGYLR EIIISDANML NINTAFSAIG DYGSHPDDKF 300 NPDAFPSLEK ITLHDIIGKN IIMAGNFSGI QQAPFTSMCL FNISLSMSSA FSSCWSCSNV 360 SGYSELVFPQ PCADLKNSNA SSCFSILMRP NGRGGTGAIL * 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 1.0e-14 | 96 | 282 | 191 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 6.0e-17 | 78 | 292 | 226 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 9.0e-23 | 90 | 282 | 197 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-23 | 89 | 318 | 239 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 7.0e-44 | 2 | 296 | 320 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI22951.1 | 0 | 1 | 372 | 56 | 427 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002273305.1 | 0 | 1 | 372 | 58 | 429 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002314352.1 | 0 | 1 | 378 | 56 | 432 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002328589.1 | 0 | 1 | 387 | 58 | 441 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002516982.1 | 0 | 1 | 388 | 56 | 444 | Polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 3e-28 | 2 | 289 | 46 | 358 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 3e-28 | 2 | 289 | 46 | 358 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 3e-28 | 2 | 289 | 46 | 358 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 3e-28 | 2 | 289 | 46 | 358 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 5e-16 | 28 | 282 | 52 | 304 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO797483 | 387 | 1 | 384 | 0 |
| HO797919 | 342 | 1 | 342 | 0 |
| DW501410 | 240 | 1 | 240 | 0 |
| ES848652 | 263 | 2 | 263 | 0 |
| DV143218 | 257 | 18 | 274 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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