| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.006G260100.2 |
| Family | GH28 |
| Protein Properties | Length: 458 Molecular Weight: 49661.1 Isoelectric Point: 6.6466 |
| Chromosome | Chromosome/Scaffold: 06 Start: 50099907 End: 50102801 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 72 | 418 | 0 |
| DKGGAQLYVPPGRWLTGSFNLTSHLTLFLEKGAVILGSQDPSHWDIVEPLPSYGRGIELPGRRYRSLVNGYMLRDVVITGDNGTIDGQGSVWWEWFTSHS LNYTRPHLVEFVSSKDVHISNITFLNAPAYNIHPVYCSNVHIHNVSVYAPPGSPYTVGIVPDSSDNVCIEDCNISTGHDAIALKSGWDEYGIAYGRPTTN VHIRSVHLQSSTGSSLAFGSEMSGGISNVQVEHVHLYNSFTGIQFRTTKGRGGYLREIIISDANMLNINTAFSAIGDYGSHPDDKFNPDAFPSLEKITLH DIIGKNIIMAGNFSGIQQAPFTSMCLFNISLSMSSAFSSCWSCSNVS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 458 Download |
| MKMPVALLVL LALCNAIKVN GEGNYLQCDH NPTSQPRPHS VSILEFGAVG DGKTLNTMAF 60 QNAIFYLKSF ADKGGAQLYV PPGRWLTGSF NLTSHLTLFL EKGAVILGSQ DPSHWDIVEP 120 LPSYGRGIEL PGRRYRSLVN GYMLRDVVIT GDNGTIDGQG SVWWEWFTSH SLNYTRPHLV 180 EFVSSKDVHI SNITFLNAPA YNIHPVYCSN VHIHNVSVYA PPGSPYTVGI VPDSSDNVCI 240 EDCNISTGHD AIALKSGWDE YGIAYGRPTT NVHIRSVHLQ SSTGSSLAFG SEMSGGISNV 300 QVEHVHLYNS FTGIQFRTTK GRGGYLREII ISDANMLNIN TAFSAIGDYG SHPDDKFNPD 360 AFPSLEKITL HDIIGKNIIM AGNFSGIQQA PFTSMCLFNI SLSMSSAFSS CWSCSNVSGY 420 SELVFPQPCA DLKNSNASSC FSILMRPNGR GGTGAIL* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 5.0e-16 | 14 | 340 | 342 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-23 | 146 | 375 | 239 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 4.0e-24 | 33 | 349 | 335 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 4.0e-24 | 39 | 339 | 309 | + Probable polygalacturonase At3g15720 | ||
| COG5434 | PGU1 | 1.0e-51 | 29 | 353 | 350 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI22951.1 | 0 | 15 | 429 | 13 | 427 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002273305.1 | 0 | 1 | 429 | 1 | 429 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002314352.1 | 0 | 16 | 435 | 14 | 432 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002328589.1 | 0 | 1 | 444 | 1 | 441 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002516982.1 | 0 | 3 | 445 | 1 | 444 | Polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 4e-34 | 29 | 346 | 16 | 358 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 4e-34 | 29 | 346 | 16 | 358 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 4e-34 | 29 | 346 | 16 | 358 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 4e-34 | 29 | 346 | 16 | 358 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 7e-16 | 85 | 339 | 52 | 304 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
