| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.006G260500.2 |
| Family | GH28 |
| Protein Properties | Length: 352 Molecular Weight: 37781.3 Isoelectric Point: 8.8322 |
| Chromosome | Chromosome/Scaffold: 06 Start: 50119355 End: 50121445 |
| Description | polygalacturonase 4 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 77 | 346 | 0 |
| KAACNFRGNAMMVIPKGDFLIGPIIFQGPCFNPSSLIIQANGIVKAQADLSYFTGGADDTDWITFQSIKGLILSGTGTFHGQGAKAWKYNDCAHKSHCVR LAANFKFNKVNDAIINGINSIDPKGFHIMVTVCQNFRLLNLKLQAPGDSPNTDGIHISKSTVVKIAHCVIGTGDDCVSMIHGSIDISVNKVICGPGHGFS VGSLGHYDDEADVNKIVVTNSSLTDTTNGVRIKTYKTDSPSKASSIFFTDLIMNRVKNPIIIDQEYGNRR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 352 Download |
| MAFVTKARIS LILLLCLVDR NGCERTGPFN PAEALVKAKN AAAGKLGPDV KTFNVLDYGA 60 KADGKTDSSI NFIRTFKAAC NFRGNAMMVI PKGDFLIGPI IFQGPCFNPS SLIIQANGIV 120 KAQADLSYFT GGADDTDWIT FQSIKGLILS GTGTFHGQGA KAWKYNDCAH KSHCVRLAAN 180 FKFNKVNDAI INGINSIDPK GFHIMVTVCQ NFRLLNLKLQ APGDSPNTDG IHISKSTVVK 240 IAHCVIGTGD DCVSMIHGSI DISVNKVICG PGHGFSVGSL GHYDDEADVN KIVVTNSSLT 300 DTTNGVRIKT YKTDSPSKAS SIFFTDLIMN RVKNPIIIDQ EYGNRRSTQV T* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 3.0e-61 | 53 | 342 | 290 | + polygalacturonase | ||
| PLN03010 | PLN03010 | 1.0e-62 | 51 | 342 | 294 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 3.0e-64 | 51 | 342 | 297 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-67 | 88 | 344 | 257 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 4.0e-101 | 47 | 342 | 298 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN69218.1 | 0 | 48 | 342 | 51 | 341 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002272193.1 | 0 | 48 | 342 | 51 | 341 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002334010.1 | 0 | 23 | 348 | 18 | 333 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002516967.1 | 0 | 45 | 345 | 44 | 335 | Exopolygalacturonase clone GBGE184 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.0000000000004 | 151 | 350 | 115 | 322 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.000000000002 | 157 | 348 | 82 | 271 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.000000000002 | 157 | 348 | 82 | 271 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.000000000002 | 157 | 348 | 82 | 271 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.000000000002 | 157 | 348 | 82 | 271 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
