| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.006G266100.1 |
| Family | GH28 |
| Protein Properties | Length: 477 Molecular Weight: 51662.4 Isoelectric Point: 4.7211 |
| Chromosome | Chromosome/Scaffold: 06 Start: 50489961 End: 50493076 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 107 | 432 | 0 |
| AACSVESATILVPSDNIFTITSTIFSGPCKPGLVLQVNGVLMPPKGPDCWPKADSRKQWLVFYRLDDMKLTGNGTIEGNGHEWWELPCKPHRGPKGSSLP GPCESPAMIRFFMSSNIVVSGLRVQNSPQFHMKFDGCEGVLIEELSISTPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIGPGCSNVDINGVTCGPS HGISIGSLGVHNSQACVSNITVRNAVIRESDNGVRIKTWQGGTGSVSGISFENIQMENVRNCIIVDQYYCLSKECLNQTSAVYVTDIRYKNIKGTYDVRN PPIHFACSDTVACTNITMAEVELLPQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 477 Download |
| MDLAHVCFFI WILAILTFYQ HPINVNARYH YHKKQQKTKG SPFIDEAPAP APALVPSTSA 60 DPPSIPSDPY PTDPGDTSDC IFDVTAYGAV GDGSSDDTAA FREAWKAACS VESATILVPS 120 DNIFTITSTI FSGPCKPGLV LQVNGVLMPP KGPDCWPKAD SRKQWLVFYR LDDMKLTGNG 180 TIEGNGHEWW ELPCKPHRGP KGSSLPGPCE SPAMIRFFMS SNIVVSGLRV QNSPQFHMKF 240 DGCEGVLIEE LSISTPKLSP NTDGIHIENT KSVGIYNSMI SNGDDCISIG PGCSNVDING 300 VTCGPSHGIS IGSLGVHNSQ ACVSNITVRN AVIRESDNGV RIKTWQGGTG SVSGISFENI 360 QMENVRNCII VDQYYCLSKE CLNQTSAVYV TDIRYKNIKG TYDVRNPPIH FACSDTVACT 420 NITMAEVELL PQEGELVDDP FCWNAYGIEE TLSIPPIGCL QEGMPQAITE TSQYSC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 2.0e-74 | 77 | 461 | 393 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 7.0e-79 | 75 | 456 | 386 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-88 | 110 | 429 | 320 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 7.0e-95 | 84 | 429 | 352 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 4.0e-115 | 78 | 456 | 382 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI25976.1 | 0 | 103 | 476 | 2 | 375 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_175244.1 | 0 | 8 | 476 | 8 | 475 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002263668.1 | 0 | 18 | 476 | 17 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002312305.1 | 0 | 8 | 476 | 7 | 482 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002519290.1 | 0 | 8 | 476 | 7 | 479 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 7e-22 | 163 | 429 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 7e-22 | 163 | 429 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 7e-22 | 163 | 429 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 7e-22 | 163 | 429 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 7e-22 | 163 | 429 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DW479564 | 321 | 89 | 409 | 0 |
| CO125694 | 299 | 21 | 319 | 0 |
| CO100147 | 289 | 1 | 289 | 0 |
| CO126030 | 284 | 20 | 303 | 0 |
| DW479563 | 266 | 1 | 266 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
