| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.006G266100.2 |
| Family | GH28 |
| Protein Properties | Length: 365 Molecular Weight: 40092.9 Isoelectric Point: 5.3839 |
| Chromosome | Chromosome/Scaffold: 06 Start: 50490164 End: 50493047 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 34 | 320 | 0 |
| VLMPPKGPDCWPKADSRKQWLVFYRLDDMKLTGNGTIEGNGHEWWELPCKPHRGPKGSSLPGPCESPAMIRFFMSSNIVVSGLRVQNSPQFHMKFDGCEG VLIEELSISTPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIGPGCSNVDINGVTCGPSHGISIGSLGVHNSQACVSNITVRNAVIRESDNGVRIKTW QGGTGSVSGISFENIQMENVRNCIIVDQYYCLSKECLNQTSAVYVTDIRYKNIKGTYDVRNPPIHFACSDTVACTNITMAEVELLPQ | |||
| Full Sequence |
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| Protein Sequence Length: 365 Download |
| MLKMLICFRS LNPCLFFKPS CFSVLFFMWK VNGVLMPPKG PDCWPKADSR KQWLVFYRLD 60 DMKLTGNGTI EGNGHEWWEL PCKPHRGPKG SSLPGPCESP AMIRFFMSSN IVVSGLRVQN 120 SPQFHMKFDG CEGVLIEELS ISTPKLSPNT DGIHIENTKS VGIYNSMISN GDDCISIGPG 180 CSNVDINGVT CGPSHGISIG SLGVHNSQAC VSNITVRNAV IRESDNGVRI KTWQGGTGSV 240 SGISFENIQM ENVRNCIIVD QYYCLSKECL NQTSAVYVTD IRYKNIKGTY DVRNPPIHFA 300 CSDTVACTNI TMAEVELLPQ EGELVDDPFC WNAYGIEETL SIPPIGCLQE GMPQAITETS 360 QYSC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 2.0e-61 | 15 | 349 | 340 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 4.0e-63 | 46 | 344 | 303 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 3.0e-76 | 52 | 317 | 269 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-83 | 29 | 317 | 289 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 1.0e-92 | 31 | 344 | 316 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI25976.1 | 0 | 27 | 364 | 38 | 375 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_175244.1 | 0 | 27 | 364 | 137 | 475 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002263668.1 | 0 | 27 | 364 | 140 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002312305.1 | 0 | 27 | 364 | 145 | 482 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002519290.1 | 0 | 27 | 364 | 143 | 479 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 2e-22 | 51 | 317 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-22 | 51 | 317 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-22 | 51 | 317 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 2e-22 | 51 | 317 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 2e-22 | 51 | 317 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DW479564 | 271 | 27 | 297 | 0 |
| ES849368 | 284 | 27 | 308 | 0 |
| CX663441 | 286 | 80 | 365 | 0 |
| GR169315 | 263 | 50 | 312 | 0 |
| CU581996 | 238 | 112 | 349 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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