| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.007G026000.2 |
| Family | GH28 |
| Protein Properties | Length: 428 Molecular Weight: 46904.6 Isoelectric Point: 9.2802 |
| Chromosome | Chromosome/Scaffold: 07 Start: 1802267 End: 1806220 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 74 | 420 | 0 |
| RGGTLLYVPPGVYLTESFNLTSHMTLYLARGAVIKATQDTWTWPLVAPLPSYGRGRERPGGRYMSFIHGDGLRDVVITGENGTIDGQGGIWWNMWRQGNL QFTRPNLVEFMNSRGIIISNVIFKNSPFWNIHPVYCSNVVIRYVTILAPTDSPNTDGIDPDSSSNVCIEDSFISTGDDLVAVKSGWDEYGIAYGRPSSHI TIRRVTGSSPFAGIAVGSETSGGVEHVLAENIVIYNSGIGVNIKTNIGRGGFIKNITVSQVFMENVRTGIKITGDTGDHPDNQFNPNALPYVKGVTLKNI WGVKVQKAGSIQGLKNAPFTNICLSKINLHGMTGPRSPPWKCSDVSG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 428 Download |
| MFRTQPLVSV LLCCFTFWFH ISFGYLITCS GIVPTRYRND KVSITDFGGV GDGKTLNTKA 60 FREAIYRIQH LRRRGGTLLY VPPGVYLTES FNLTSHMTLY LARGAVIKAT QDTWTWPLVA 120 PLPSYGRGRE RPGGRYMSFI HGDGLRDVVI TGENGTIDGQ GGIWWNMWRQ GNLQFTRPNL 180 VEFMNSRGII ISNVIFKNSP FWNIHPVYCS NVVIRYVTIL APTDSPNTDG IDPDSSSNVC 240 IEDSFISTGD DLVAVKSGWD EYGIAYGRPS SHITIRRVTG SSPFAGIAVG SETSGGVEHV 300 LAENIVIYNS GIGVNIKTNI GRGGFIKNIT VSQVFMENVR TGIKITGDTG DHPDNQFNPN 360 ALPYVKGVTL KNIWGVKVQK AGSIQGLKNA PFTNICLSKI NLHGMTGPRS PPWKCSDVSG 420 AAIERPC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 1.0e-24 | 39 | 422 | 398 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 1.0e-25 | 42 | 427 | 405 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 1.0e-30 | 42 | 404 | 372 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-36 | 139 | 418 | 287 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 5.0e-55 | 42 | 341 | 322 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACC91250.1 | 0 | 28 | 427 | 27 | 428 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
| EMBL | CBI34471.1 | 0 | 12 | 423 | 1 | 424 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_194113.1 | 0 | 8 | 427 | 6 | 428 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002304552.1 | 0 | 36 | 423 | 2 | 389 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002509949.1 | 0 | 28 | 427 | 28 | 430 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 7.00649e-44 | 33 | 404 | 23 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 7.00649e-44 | 33 | 404 | 23 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 7.00649e-44 | 33 | 404 | 23 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 7.00649e-44 | 33 | 404 | 23 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 3e-17 | 85 | 345 | 51 | 310 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
