| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.007G026000.3 |
| Family | GH28 |
| Protein Properties | Length: 281 Molecular Weight: 30097.1 Isoelectric Point: 8.1305 |
| Chromosome | Chromosome/Scaffold: 07 Start: 1802467 End: 1806220 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 2 | 254 | 0 |
| WRQGNLQFTRPNLVEFMNSRGIIISNVIFKNSPFWNIHPVYCSNVVIRYVTILAPTDSPNTDGIDPDSSSNVCIEDSFISTGDDLVAVKSGWDEYGIAYG RPSSHITIRRVTGSSPFAGIAVGSETSGGVEHVLAENIVIYNSGIGVNIKTNIGRGGFIKNITVSQVFMENVRTGIKITGDTGDHPDNQFNPNALPYVKG VTLKNIWGVKVQKAGSIQGLKNAPFTNICLSKINLHGMTGPRSPPWKCSDVSG | |||
| Full Sequence |
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| Protein Sequence Length: 281 Download |
| MWRQGNLQFT RPNLVEFMNS RGIIISNVIF KNSPFWNIHP VYCSNVVIRY VTILAPTDSP 60 NTDGIDPDSS SNVCIEDSFI STGDDLVAVK SGWDEYGIAY GRPSSHITIR RVTGSSPFAG 120 IAVGSETSGG VEHVLAENIV IYNSGIGVNI KTNIGRGGFI KNITVSQVFM ENVRTGIKIT 180 GDTGDHPDNQ FNPNALPYVK GVTLKNIWGV KVQKAGSIQG LKNAPFTNIC LSKINLHGMT 240 GPRSPPWKCS DVSGAAIEVS PSPCAQLSSP QQSGSCANHF * 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 4.0e-20 | 10 | 275 | 276 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 8.0e-22 | 12 | 265 | 267 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 3.0e-22 | 12 | 238 | 232 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-29 | 10 | 252 | 249 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 1.0e-37 | 11 | 175 | 165 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI34471.1 | 0 | 1 | 278 | 168 | 445 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_194113.1 | 0 | 1 | 280 | 166 | 444 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_199002.1 | 0 | 1 | 279 | 171 | 448 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002304552.1 | 0 | 1 | 280 | 133 | 412 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002509949.1 | 0 | 1 | 279 | 167 | 445 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 1e-35 | 5 | 238 | 183 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 1e-35 | 5 | 238 | 183 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 1e-35 | 5 | 238 | 183 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 1e-35 | 5 | 238 | 183 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.000000000001 | 7 | 173 | 146 | 304 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO801770 | 278 | 2 | 279 | 0 |
| DR953387 | 281 | 1 | 281 | 0 |
| DR929230 | 281 | 1 | 281 | 0 |
| DW241081 | 263 | 17 | 279 | 0 |
| DW241516 | 259 | 21 | 279 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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