| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.007G026000.4 |
| Family | GH28 |
| Protein Properties | Length: 344 Molecular Weight: 37116 Isoelectric Point: 7.1236 |
| Chromosome | Chromosome/Scaffold: 07 Start: 1802467 End: 1804508 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 30 | 317 | 0 |
| GGRYMSFIHGDGLRDVVITGENGTIDGQGGIWWNMWRQGNLQFTRPNLVEFMNSRGIIISNVIFKNSPFWNIHPVYCSNVVIRYVTILAPTDSPNTDGID PDSSSNVCIEDSFISTGDDLVAVKSGWDEYGIAYGRPSSHITIRRVTGSSPFAGIAVGSETSGGVEHVLAENIVIYNSGIGVNIKTNIGRGGFIKNITVS QVFMENVRTGIKITGDTGDHPDNQFNPNALPYVKGVTLKNIWGVKVQKAGSIQGLKNAPFTNICLSKINLHGMTGPRSPPWKCSDVSG | |||
| Full Sequence |
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| Protein Sequence Length: 344 Download |
| MLLLCCDEDT WTWPLVAPLP SYGRGRERPG GRYMSFIHGD GLRDVVITGE NGTIDGQGGI 60 WWNMWRQGNL QFTRPNLVEF MNSRGIIISN VIFKNSPFWN IHPVYCSNVV IRYVTILAPT 120 DSPNTDGIDP DSSSNVCIED SFISTGDDLV AVKSGWDEYG IAYGRPSSHI TIRRVTGSSP 180 FAGIAVGSET SGGVEHVLAE NIVIYNSGIG VNIKTNIGRG GFIKNITVSQ VFMENVRTGI 240 KITGDTGDHP DNQFNPNALP YVKGVTLKNI WGVKVQKAGS IQGLKNAPFT NICLSKINLH 300 GMTGPRSPPW KCSDVSGAAI EVSPSPCAQL SSPQQSGSCA NHF* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 2.0e-23 | 52 | 328 | 293 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 1.0e-23 | 45 | 338 | 304 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 3.0e-25 | 49 | 301 | 261 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-35 | 36 | 315 | 287 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 4.0e-39 | 37 | 238 | 210 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACC91250.1 | 0 | 8 | 343 | 110 | 444 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
| EMBL | CBI34471.1 | 0 | 8 | 341 | 112 | 445 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_194113.1 | 0 | 8 | 343 | 110 | 444 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002304552.1 | 0 | 3 | 343 | 72 | 412 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002509949.1 | 0 | 8 | 342 | 111 | 445 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 4e-35 | 68 | 301 | 183 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 4e-35 | 68 | 301 | 183 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 4e-35 | 68 | 301 | 183 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 4e-35 | 68 | 301 | 183 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 2e-16 | 52 | 242 | 117 | 310 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DW115456 | 304 | 8 | 311 | 0 |
| DR929230 | 302 | 43 | 344 | 0 |
| HO801770 | 291 | 52 | 342 | 0 |
| DR953387 | 295 | 50 | 344 | 0 |
| EB439186 | 281 | 33 | 312 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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