| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.007G102200.2 |
| Family | GH28 |
| Protein Properties | Length: 482 Molecular Weight: 52350.8 Isoelectric Point: 7.0189 |
| Chromosome | Chromosome/Scaffold: 07 Start: 7612256 End: 7614445 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 84 | 433 | 0 |
| ANGGGAQLYVPAGQWLTGSFSLTSHFTLYLHKDAVLLASQDMSEWPVLKALPSYGRGRDAAGGRFASLIFGTNLTDVVVTGANGTIDGQGAFWWQNFHKG KLKYTRPYLIEFMYSDNIQISNLTLLNSPSWNVHPVYSSNILVQGITIIAPITSPNTDGINPDSCTNVRIEDSYIVSGDDCIAVKSGWDEYGISFGMPTK QLVIRRLTCISPYSAAIALGSEMSGGIEDVRAEDITAIHTESGVRIKTARGRGGFVKDIYVKGMTLHTMKWVFWMTGNYKAHADNHYDPKALPVIQGINY RDIMADNVSMAARLEGIEGDPFTQICISNVTIGMAAKAKKVPWTCTDVEG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 482 Download |
| MCTYFALLTL QVTGIATLLV LVALILGQKG AEARKGRILE SFEYIAMSCR AHSASITDFG 60 GIGDGKTSNT KAFQDAVNHL SQYANGGGAQ LYVPAGQWLT GSFSLTSHFT LYLHKDAVLL 120 ASQDMSEWPV LKALPSYGRG RDAAGGRFAS LIFGTNLTDV VVTGANGTID GQGAFWWQNF 180 HKGKLKYTRP YLIEFMYSDN IQISNLTLLN SPSWNVHPVY SSNILVQGIT IIAPITSPNT 240 DGINPDSCTN VRIEDSYIVS GDDCIAVKSG WDEYGISFGM PTKQLVIRRL TCISPYSAAI 300 ALGSEMSGGI EDVRAEDITA IHTESGVRIK TARGRGGFVK DIYVKGMTLH TMKWVFWMTG 360 NYKAHADNHY DPKALPVIQG INYRDIMADN VSMAARLEGI EGDPFTQICI SNVTIGMAAK 420 AKKVPWTCTD VEGISSGVSP RPCDQLPDQG PEKITACDFP AEPLSIDRVV LKSCTYRMKY 480 T* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 2.0e-22 | 55 | 436 | 402 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 7.0e-29 | 34 | 441 | 425 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 3.0e-29 | 51 | 440 | 404 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-32 | 152 | 350 | 204 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 9.0e-56 | 54 | 356 | 332 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| Swiss-Prot | A7PZL3 | 0 | 31 | 480 | 40 | 489 | PGLR_VITVI RecName: Full=Probable polygalacturonase; Short=PG; AltName: Full=Pectinase |
| RefSeq | XP_002277736.1 | 0 | 31 | 480 | 28 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002278930.1 | 0 | 29 | 480 | 28 | 479 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301370.1 | 0 | 29 | 480 | 18 | 469 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002511903.1 | 0 | 11 | 480 | 12 | 471 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 52 | 415 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 52 | 415 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 52 | 415 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 52 | 415 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 3e-17 | 70 | 352 | 26 | 304 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
