| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.007G102200.4 |
| Family | GH28 |
| Protein Properties | Length: 358 Molecular Weight: 39152.7 Isoelectric Point: 6.7663 |
| Chromosome | Chromosome/Scaffold: 07 Start: 7612865 End: 7614445 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 21 | 309 | 0 |
| GGRFASLIFGTNLTDVVVTGANGTIDGQGAFWWQNFHKGKLKYTRPYLIEFMYSDNIQISNLTLLNSPSWNVHPVYSSNILVQGITIIAPITSPNTDGIN PDSCTNVRIEDSYIVSGDDCIAVKSGWDEYGISFGMPTKQLVIRRLTCISPYSAAIALGSEMSGGIEDVRAEDITAIHTESGVRIKTARGRGGFVKDIYV KGMTLHTMKWVFWMTGNYKAHADNHYDPKALPVIQGINYRDIMADNVSMAARLEGIEGDPFTQICISNVTIGMAAKAKKVPWTCTDVEG | |||
| Full Sequence |
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| Protein Sequence Length: 358 Download |
| MSEWPVLKAL PSYGRGRDAA GGRFASLIFG TNLTDVVVTG ANGTIDGQGA FWWQNFHKGK 60 LKYTRPYLIE FMYSDNIQIS NLTLLNSPSW NVHPVYSSNI LVQGITIIAP ITSPNTDGIN 120 PDSCTNVRIE DSYIVSGDDC IAVKSGWDEY GISFGMPTKQ LVIRRLTCIS PYSAAIALGS 180 EMSGGIEDVR AEDITAIHTE SGVRIKTARG RGGFVKDIYV KGMTLHTMKW VFWMTGNYKA 240 HADNHYDPKA LPVIQGINYR DIMADNVSMA ARLEGIEGDP FTQICISNVT IGMAAKAKKV 300 PWTCTDVEGI SSGVSPRPCD QLPDQGPEKI TACDFPAEPL SIDRVVLKSC TYRMKYT* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 9.0e-20 | 42 | 312 | 278 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 3.0e-23 | 40 | 317 | 285 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 4.0e-26 | 28 | 316 | 296 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 9.0e-32 | 28 | 226 | 204 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 5.0e-39 | 26 | 225 | 214 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| Swiss-Prot | A7PZL3 | 0 | 1 | 356 | 134 | 489 | PGLR_VITVI RecName: Full=Probable polygalacturonase; Short=PG; AltName: Full=Pectinase |
| RefSeq | NP_191708.1 | 0 | 1 | 354 | 116 | 475 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002277736.1 | 0 | 1 | 356 | 122 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301370.1 | 0 | 1 | 356 | 114 | 469 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002511903.1 | 0 | 1 | 356 | 125 | 471 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 2e-36 | 59 | 291 | 183 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 2e-36 | 59 | 291 | 183 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 2e-36 | 59 | 291 | 183 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 2e-36 | 59 | 291 | 183 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.00000000000002 | 43 | 218 | 117 | 294 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| ES810566 | 333 | 26 | 358 | 0 |
| ES810198 | 314 | 42 | 355 | 0 |
| ES807972 | 297 | 53 | 349 | 0 |
| DT554884 | 293 | 3 | 295 | 0 |
| CO126374 | 285 | 5 | 289 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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