Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.007G120000.1 |
Family | GH28 |
Protein Properties | Length: 501 Molecular Weight: 54155.1 Isoelectric Point: 6.3455 |
Chromosome | Chromosome/Scaffold: 07 Start: 9433502 End: 9436218 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 129 | 454 | 0 |
SACQVNASVLHVPSGFSFMIQSTIFTGPCQGGLVFQVDGTLMPPDGPEDWPKNSSKRQWLVFYRINGMSLQGGGLIDGRGQKWWDLPCKPHKGINRTTLS GPCDSPIAIRFFMSSNLTVQGLKVKDSPQFHFRFDGCKNVHVESLHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCISIGSGCYDVDIKNITCGPG HGISIGSLGNHNSRACVSNITVRDSVIKVSDNGVRIKTWQGGSGAVSGITFSNIHMESVRNPIIIDQFYCLTKGCANQTSAVYVSDILYESIKGTYDIRS PPMHLACSDSVPCTNITLSDIELLPA |
Full Sequence |
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Protein Sequence Length: 501 Download |
MVHSRLSLSI FCMSFVCFFL SAQGRWHHHH TKHKHHTHHH KISEISVPPF PAPEPSSPFA 60 PEPASGPFAP EPSSPSAPHP TVPFAPEPSS PSNDGNANIS TGVFDVRNFG AVGDGVTDDT 120 EAFKMAWDSA CQVNASVLHV PSGFSFMIQS TIFTGPCQGG LVFQVDGTLM PPDGPEDWPK 180 NSSKRQWLVF YRINGMSLQG GGLIDGRGQK WWDLPCKPHK GINRTTLSGP CDSPIAIRFF 240 MSSNLTVQGL KVKDSPQFHF RFDGCKNVHV ESLHITAPAL SPNTDGIHIE NTNGVEIYNS 300 VISNGDDCIS IGSGCYDVDI KNITCGPGHG ISIGSLGNHN SRACVSNITV RDSVIKVSDN 360 GVRIKTWQGG SGAVSGITFS NIHMESVRNP IIIDQFYCLT KGCANQTSAV YVSDILYESI 420 KGTYDIRSPP MHLACSDSVP CTNITLSDIE LLPAQGDIVL DPFCWNAYGD METLTIPPVS 480 CLMEGIPRRI LDNNDMGYCG * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 2.0e-82 | 100 | 482 | 390 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 2.0e-87 | 92 | 478 | 397 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 3.0e-94 | 135 | 451 | 317 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-103 | 106 | 451 | 350 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-123 | 100 | 478 | 383 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37004.1 | 0 | 89 | 493 | 74 | 479 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002302793.1 | 0 | 94 | 499 | 59 | 457 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002320271.1 | 0 | 95 | 499 | 34 | 438 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515219.1 | 0 | 1 | 499 | 1 | 537 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 5e-27 | 196 | 451 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 5e-27 | 196 | 451 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 5e-27 | 196 | 451 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 5e-27 | 196 | 451 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 5e-27 | 196 | 451 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |