Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.007G152500.1 |
Family | PL1 |
Protein Properties | Length: 446 Molecular Weight: 49752.2 Isoelectric Point: 8.7072 |
Chromosome | Chromosome/Scaffold: 07 Start: 13037453 End: 13041272 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 159 | 363 | 0 |
IQDRPLWIVFKRDMVITLKQELIMNSFKTIDARGVNVHIAYGACITIQFVTNIIIHGLHIHNCKPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWID HNSLSNCADGLIDAVMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQ GNRYL |
Full Sequence |
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Protein Sequence Length: 446 Download |
MEISRRFFFS SFTLLLVMLF VCVNGSAEKT ELNSRLAEGN KLQGLKNSST ADGLDDDKWK 60 NEHAVDNPEE IASMVDMTIK NSTARRNLGY FSCGTGNPID DCWRCDRRWY RRRRRLASCG 120 IGFGRNAIGG RDGRYYVVTD PGDDNPVNPK PGTLRHAVIQ DRPLWIVFKR DMVITLKQEL 180 IMNSFKTIDA RGVNVHIAYG ACITIQFVTN IIIHGLHIHN CKPTGNAMVR SSPSHYGWRT 240 MADGDGISIF GSSHIWIDHN SLSNCADGLI DAVMGSTAIT ISNNYFTHHN EVMLLGHSDS 300 YVRDKQMQVT IAYNHFGEGL IQRMPRCRHG YFHVVNNDYT HWEMYAIGGS ANPTINSQGN 360 RYLAPVNPFA KEVTKRVDTY SDEWKHWNWR SEGDLLLNGA YFTPSGAGRA ASYARASSLS 420 AKSSFLVGTL TSNAGALACR PGRMC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 1.0e-24 | 184 | 380 | 209 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 4.0e-69 | 177 | 362 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 5.0e-80 | 171 | 365 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX88800.1 | 0 | 1 | 445 | 1 | 437 | ripening-related pectate lyase [Mangifera indica] |
EMBL | CAN75298.1 | 0 | 40 | 445 | 37 | 445 | hypothetical protein [Vitis vinifera] |
EMBL | CBI33346.1 | 0 | 33 | 445 | 25 | 430 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002265100.1 | 0 | 40 | 445 | 37 | 445 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002521130.1 | 0 | 13 | 445 | 14 | 441 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 97 | 437 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 97 | 437 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 5e-17 | 166 | 364 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000002 | 245 | 339 | 190 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.00000000001 | 245 | 339 | 205 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |