| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.007G167600.1 |
| Family | GH28 |
| Protein Properties | Length: 451 Molecular Weight: 46838.3 Isoelectric Point: 7.3797 |
| Chromosome | Chromosome/Scaffold: 07 Start: 14917325 End: 14919149 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 73 | 405 | 0 |
| KEACASPAPSQIVIPAGTFLLSRAVLEGPCKGPVDIQVQGTIKAPPDPSHFKDDNWVIFSRIEGFTMSGGGIFDGQGALAWSKNDCHKKKKCTLFPVNIR FNFLTNAYIHDITTKDSKQFNVNVLGCKNITFEHFTVLNPEHSLNTDGIHIGRSDGVTILHSEIKTGDDCISLGDGSKNVVVNGISCGPGHGISIGSLGK YQGEEPVAGIKIANCTITNTMNGVRIKSWPASYPGTASDMHFEDITMDNVSNPIIIDQQYCPWNLCDLKNPSRIKLSNISFKNIRGTAAGKEAVKIICSA GFPCEGVELADIDLTYTGPDGPAISQCSNVSPK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 451 Download |
| MGVKEIITVI SVLLLLFPST VKPRAVGGAQ PAGGPQGGAP EGGGGGTLDV VAQFGAKADE 60 KTDLSQPLLN AWKEACASPA PSQIVIPAGT FLLSRAVLEG PCKGPVDIQV QGTIKAPPDP 120 SHFKDDNWVI FSRIEGFTMS GGGIFDGQGA LAWSKNDCHK KKKCTLFPVN IRFNFLTNAY 180 IHDITTKDSK QFNVNVLGCK NITFEHFTVL NPEHSLNTDG IHIGRSDGVT ILHSEIKTGD 240 DCISLGDGSK NVVVNGISCG PGHGISIGSL GKYQGEEPVA GIKIANCTIT NTMNGVRIKS 300 WPASYPGTAS DMHFEDITMD NVSNPIIIDQ QYCPWNLCDL KNPSRIKLSN ISFKNIRGTA 360 AGKEAVKIIC SAGFPCEGVE LADIDLTYTG PDGPAISQCS NVSPKLSGKQ NPPICAAPAP 420 TSPGGQAGPP KASPGGKASP GGKASLGATA * 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-80 | 51 | 386 | 342 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 4.0e-85 | 51 | 415 | 367 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 2.0e-92 | 50 | 415 | 372 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-124 | 76 | 402 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 4.0e-125 | 51 | 416 | 369 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ADC53480.1 | 0 | 48 | 420 | 33 | 405 | polygalacturonase [Gossypium hirsutum] |
| Swiss-Prot | Q39766 | 0 | 6 | 427 | 7 | 407 | PGLR_GOSBA RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
| Swiss-Prot | Q39786 | 0 | 6 | 427 | 7 | 407 | PGLR_GOSHI RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
| RefSeq | XP_002273500.1 | 0 | 45 | 419 | 22 | 396 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002282563.1 | 0 | 51 | 416 | 30 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 8e-18 | 138 | 402 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 8e-18 | 138 | 402 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 8e-18 | 138 | 402 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 8e-18 | 138 | 402 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 8e-18 | 138 | 402 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
