Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.007G231600.1 |
Family | PL4 |
Protein Properties | Length: 676 Molecular Weight: 77259.1 Isoelectric Point: 6.0932 |
Chromosome | Chromosome/Scaffold: 07 Start: 29136546 End: 29142052 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 49 | 657 | 0 |
VRLQISHHNVVIDNGLIEVTIENPSGHVTGIKYMGMDNVLECGNPNSNRGYWDFVWDNSTFDKMETKHVKVIAHTDELVEISFTKNWDFRADHGKTVPLN IDKRFIVRRGVPGVYMYGIFERQEDFPDAQMYQLRIVFKLKEDKFRFMAISDTRQGVMPRGEDRDNTRSQTLAFKEAVLMTNPSNPQFRGEVDDKYQYSC ENKDNKLHGWISDDEAVGFWIITPSNEFRTGGPHKQDLTSHVGPIALSMFVSTHYTGIDIDVTYKKGEAWRKAFGPVLIFLNSASSDDDCRKTLWNDAKR QLSEEIESWPYNFTRSEDLPHAGDRGEVCGQLLVRDRCVDEELMQAQSAFVGLAVPGNVGSWQTEGKGYQFWTETDNTGRFNIKNVRPGEYNLYAWVHGF IGDYKLDLSITIQPGNKVNLGTLIYDPPRNGPTLWEIGIPDRTAAEFFIPEPDPTFVNPLCLDAADKFRQYGLWDRYSDFYRHGDVVYTVGVSNYSRDWF FAHVLRNTGNITDLSTTTWQIKYNLQDVNEKGNYTLQLALAAASYAELQIRFNNPDAIQPCFTTTRIGYDNAVARHGIHGLYRLYSINIPGNRFIRGNNT IFLTQTRSH |
Full Sequence |
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Protein Sequence Length: 676 Download |
MEKVAHRSHL GQLVLWLLMI VELSLFYSAC SAEIPVRKIL NLGDCNPHVR LQISHHNVVI 60 DNGLIEVTIE NPSGHVTGIK YMGMDNVLEC GNPNSNRGYW DFVWDNSTFD KMETKHVKVI 120 AHTDELVEIS FTKNWDFRAD HGKTVPLNID KRFIVRRGVP GVYMYGIFER QEDFPDAQMY 180 QLRIVFKLKE DKFRFMAISD TRQGVMPRGE DRDNTRSQTL AFKEAVLMTN PSNPQFRGEV 240 DDKYQYSCEN KDNKLHGWIS DDEAVGFWII TPSNEFRTGG PHKQDLTSHV GPIALSMFVS 300 THYTGIDIDV TYKKGEAWRK AFGPVLIFLN SASSDDDCRK TLWNDAKRQL SEEIESWPYN 360 FTRSEDLPHA GDRGEVCGQL LVRDRCVDEE LMQAQSAFVG LAVPGNVGSW QTEGKGYQFW 420 TETDNTGRFN IKNVRPGEYN LYAWVHGFIG DYKLDLSITI QPGNKVNLGT LIYDPPRNGP 480 TLWEIGIPDR TAAEFFIPEP DPTFVNPLCL DAADKFRQYG LWDRYSDFYR HGDVVYTVGV 540 SNYSRDWFFA HVLRNTGNIT DLSTTTWQIK YNLQDVNEKG NYTLQLALAA ASYAELQIRF 600 NNPDAIQPCF TTTRIGYDNA VARHGIHGLY RLYSINIPGN RFIRGNNTIF LTQTRSHALF 660 DAVMYDYIRL EAPAV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13620 | CarboxypepD_reg | 0.008 | 411 | 468 | 58 | + Carboxypeptidase regulatory-like domain. | ||
cd10316 | RGL4_M | 1.0e-31 | 372 | 471 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 2.0e-44 | 483 | 671 | 191 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 5.0e-68 | 57 | 337 | 291 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 2.0e-72 | 50 | 240 | 195 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAS99719.1 | 0 | 52 | 673 | 56 | 674 | At2g22620 [Arabidopsis thaliana] |
RefSeq | NP_179847.1 | 0 | 52 | 673 | 56 | 674 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002308510.1 | 0 | 14 | 673 | 15 | 671 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527229.1 | 0 | 10 | 674 | 11 | 668 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527245.1 | 0 | 58 | 674 | 2 | 619 | lyase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nkg_A | 0.004 | 418 | 651 | 283 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus |
PDB | 3njv_A | 0.004 | 418 | 651 | 283 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus |
PDB | 2xhn_B | 0.004 | 418 | 651 | 283 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |
PDB | 2xhn_A | 0.004 | 418 | 651 | 283 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |
PDB | 3njx_A | 0.004 | 418 | 651 | 283 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant H210a |