Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.007G231600.3 |
Family | PL4 |
Protein Properties | Length: 595 Molecular Weight: 68195.5 Isoelectric Point: 5.6396 |
Chromosome | Chromosome/Scaffold: 07 Start: 29137512 End: 29142052 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 5 | 576 | 0 |
NVLECGNPNSNRGYWDFVWDNSTFDKMETKHVKVIAHTDELVEISFTKNWDFRADHGKTVPLNIDKRFIVRRGVPGVYMYGIFERQEDFPDAQMYQLRIV FKLKEDKFRFMAISDTRQGVMPRGEDRDNTRSQTLAFKEAVLMTNPSNPQFRGEVDDKYQYSCENKDNKLHGWISDDEAVGFWIITPSNEFRTGGPHKQD LTSHVGPIALSMFVSTHYTGIDIDVTYKKGEAWRKAFGPVLIFLNSASSDDDCRKTLWNDAKRQLSEEIESWPYNFTRSEDLPHAGDRGEVCGQLLVRDR CVDEELMQAQSAFVGLAVPGNVGSWQTEGKGYQFWTETDNTGRFNIKNVRPGEYNLYAWVHGFIGDYKLDLSITIQPGNKVNLGTLIYDPPRNGPTLWEI GIPDRTAAEFFIPEPDPTFVNPLCLDAADKFRQYGLWDRYSDFYRHGDVVYTVGVSNYSRDWFFAHVLRNTGNITDLSTTTWQIKYNLQDVNEKGNYTLQ LALAAASYAELQIRFNNPDAIQPCFTTTRIGYDNAVARHGIHGLYRLYSINIPGNRFIRGNNTIFLTQTRSH |
Full Sequence |
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Protein Sequence Length: 595 Download |
MGMDNVLECG NPNSNRGYWD FVWDNSTFDK METKHVKVIA HTDELVEISF TKNWDFRADH 60 GKTVPLNIDK RFIVRRGVPG VYMYGIFERQ EDFPDAQMYQ LRIVFKLKED KFRFMAISDT 120 RQGVMPRGED RDNTRSQTLA FKEAVLMTNP SNPQFRGEVD DKYQYSCENK DNKLHGWISD 180 DEAVGFWIIT PSNEFRTGGP HKQDLTSHVG PIALSMFVST HYTGIDIDVT YKKGEAWRKA 240 FGPVLIFLNS ASSDDDCRKT LWNDAKRQLS EEIESWPYNF TRSEDLPHAG DRGEVCGQLL 300 VRDRCVDEEL MQAQSAFVGL AVPGNVGSWQ TEGKGYQFWT ETDNTGRFNI KNVRPGEYNL 360 YAWVHGFIGD YKLDLSITIQ PGNKVNLGTL IYDPPRNGPT LWEIGIPDRT AAEFFIPEPD 420 PTFVNPLCLD AADKFRQYGL WDRYSDFYRH GDVVYTVGVS NYSRDWFFAH VLRNTGNITD 480 LSTTTWQIKY NLQDVNEKGN YTLQLALAAA SYAELQIRFN NPDAIQPCFT TTRIGYDNAV 540 ARHGIHGLYR LYSINIPGNR FIRGNNTIFL TQTRSHALFD AVMYDYIRLE APAV* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13620 | CarboxypepD_reg | 0.008 | 330 | 387 | 58 | + Carboxypeptidase regulatory-like domain. | ||
cd10316 | RGL4_M | 3.0e-31 | 291 | 390 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 8.0e-44 | 402 | 590 | 191 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 7.0e-58 | 2 | 159 | 162 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
cd10320 | RGL4_N | 6.0e-59 | 5 | 256 | 262 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAS99719.1 | 0 | 2 | 592 | 87 | 674 | At2g22620 [Arabidopsis thaliana] |
RefSeq | NP_179847.1 | 0 | 2 | 592 | 87 | 674 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002308510.1 | 0 | 2 | 592 | 82 | 671 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527229.1 | 0 | 2 | 593 | 79 | 668 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527245.1 | 0 | 2 | 593 | 27 | 619 | lyase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3njx_A | 0.004 | 337 | 570 | 283 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant H210a |
PDB | 1nkg_A | 0.004 | 337 | 570 | 283 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus |
PDB | 3njv_A | 0.005 | 337 | 570 | 283 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus |
PDB | 2xhn_B | 0.005 | 337 | 570 | 283 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |
PDB | 2xhn_A | 0.005 | 337 | 570 | 283 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
ES815855 | 370 | 216 | 574 | 0 |
ES839415 | 269 | 327 | 595 | 0 |
DW508463 | 265 | 216 | 480 | 0 |
CO099050 | 249 | 216 | 464 | 0 |
ES815855 | 129 | 457 | 584 | 0.00003 |
Sequence Alignments (This image is cropped. Click for full image.) |
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