| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.007G360000.1 |
| Family | GH28 |
| Protein Properties | Length: 471 Molecular Weight: 51514 Isoelectric Point: 5.1286 |
| Chromosome | Chromosome/Scaffold: 07 Start: 59114593 End: 59119141 |
| Description | polygalacturonase abscission zone A. thaliana |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 123 | 457 | 0 |
| KKACSLNGAVILQVPEGKNYILKPVKFSGPCNSNLTIQILGNIMASDDRSDYNEDSRHWLLFQKVDNLLVEGHDGGVINGNGMIWWQNSCKINKNLPCKD APTAVTFYNSQNLVVRNLNIRDAQQIHVSFEKCTNVEASGFKITSPKISPNTDGIHITETKNIRITSSIIGTGDDCISIVNGSQNMQAMDITCGPGHGIS IGSLGSKNSKAYVSGVTIDGAKLYGTANGVRIKTWQGGSGTASNIIFQNIEMYNVSNPIIIDQNYCDQSKTCKEQSSAVQVKDVLYNNINGTSTSEFAIN FNCSKNHPCQGIVLQNVNLLQEQEHRPAKAICNNV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 471 Download |
| MAQQNIQSLV FSYFIVLILF SLFSHYNALK EDLNASCNNY NVEDEMAAGY DPGAYPSYFT 60 AIEGGGMKLE DPMTVALRDD EVLGMKQGYG VALRWTETVV NVDDFGAYGD KNVDTEAFEK 120 AWKKACSLNG AVILQVPEGK NYILKPVKFS GPCNSNLTIQ ILGNIMASDD RSDYNEDSRH 180 WLLFQKVDNL LVEGHDGGVI NGNGMIWWQN SCKINKNLPC KDAPTAVTFY NSQNLVVRNL 240 NIRDAQQIHV SFEKCTNVEA SGFKITSPKI SPNTDGIHIT ETKNIRITSS IIGTGDDCIS 300 IVNGSQNMQA MDITCGPGHG ISIGSLGSKN SKAYVSGVTI DGAKLYGTAN GVRIKTWQGG 360 SGTASNIIFQ NIEMYNVSNP IIIDQNYCDQ SKTCKEQSSA VQVKDVLYNN INGTSTSEFA 420 INFNCSKNHP CQGIVLQNVN LLQEQEHRPA KAICNNVILK EGDNVFPQCP * 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 1.0e-84 | 100 | 441 | 346 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 8.0e-102 | 98 | 470 | 380 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-118 | 126 | 457 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 6.0e-137 | 96 | 442 | 349 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 1.0e-175 | 78 | 469 | 393 | + polygalacturonase ADPG | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF71160.1 | 0 | 6 | 470 | 3 | 456 | AF152758_1 polygalacturonase A [Actinidia chinensis] |
| GenBank | ACJ06506.1 | 0 | 83 | 470 | 58 | 441 | polygalacturonase [Diospyros kaki] |
| Swiss-Prot | P35336 | 0 | 6 | 469 | 3 | 455 | PGLR_ACTDE RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
| RefSeq | XP_002308956.1 | 0 | 17 | 470 | 1 | 443 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002529616.1 | 0 | 54 | 470 | 64 | 474 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-21 | 192 | 445 | 119 | 365 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 2e-21 | 189 | 454 | 69 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-21 | 189 | 454 | 69 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-21 | 189 | 454 | 69 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 2e-21 | 189 | 454 | 69 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
