| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.008G013400.1 |
| Family | GH28 |
| Protein Properties | Length: 409 Molecular Weight: 44049.5 Isoelectric Point: 8.4677 |
| Chromosome | Chromosome/Scaffold: 08 Start: 1554034 End: 1555735 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 72 | 397 | 0 |
| WNKACQATGEVDIMIPKGTYLVGPLKFAGPCENVSKIVVHMKGYLKATTNLFKYGDGAGWVEFRWIEGLTLTGGGTFDGQGAKAWPYNSCSTDFNCKLLP TLQQNVKFLAMNRTIVRGITSVNSKFFHMALVECKNFKGSKIKISAPADSPNTDGIHIQRSSGVYFSRSLIGTGDDCISIGQGILNVGSLGRYKDEGDVS GLVVRDCTMIGTSNGIRIKTWANSPGRSEATNMTFENINMENVTNPIIIDQSYCPFASCTPMGPSQVKLSDIYFKKIKGTSLSAVAVALECSKGIPCQDI YLEDVHLELATGEKQVTSTCKNVRAK | |||
| Full Sequence |
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| Protein Sequence Length: 409 Download |
| MSLEIPFKLL LPFSSFSFTG VPAGATTAGL GSQHGQLLPY NNQRTSHFFN VKTFGAQADG 60 LTDDTKAFLS AWNKACQATG EVDIMIPKGT YLVGPLKFAG PCENVSKIVV HMKGYLKATT 120 NLFKYGDGAG WVEFRWIEGL TLTGGGTFDG QGAKAWPYNS CSTDFNCKLL PTLQQNVKFL 180 AMNRTIVRGI TSVNSKFFHM ALVECKNFKG SKIKISAPAD SPNTDGIHIQ RSSGVYFSRS 240 LIGTGDDCIS IGQGILNVGS LGRYKDEGDV SGLVVRDCTM IGTSNGIRIK TWANSPGRSE 300 ATNMTFENIN MENVTNPIII DQSYCPFASC TPMGPSQVKL SDIYFKKIKG TSLSAVAVAL 360 ECSKGIPCQD IYLEDVHLEL ATGEKQVTST CKNVRAKYIG TQIPPPCA* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 9.0e-74 | 46 | 407 | 378 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 5.0e-74 | 44 | 404 | 381 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 5.0e-75 | 44 | 407 | 389 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-84 | 76 | 394 | 334 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 0 | 23 | 408 | 401 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA16789.1 | 0 | 67 | 407 | 1 | 361 | polygalacturonase-like protein [Arabidopsis thaliana] |
| EMBL | CBI37725.1 | 0 | 10 | 408 | 10 | 388 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_193552.1 | 0 | 48 | 407 | 34 | 413 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002279959.1 | 0 | 10 | 408 | 10 | 420 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002312795.1 | 0 | 14 | 408 | 7 | 410 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.000000000002 | 144 | 378 | 115 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.000000000003 | 140 | 394 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.000000000003 | 140 | 394 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.000000000003 | 140 | 394 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.000000000003 | 140 | 394 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DR944704 | 228 | 195 | 407 | 0 |
| DR933566 | 210 | 185 | 379 | 0 |
| DT736437 | 259 | 49 | 292 | 0 |
| DR938457 | 224 | 199 | 407 | 0 |
| FR598632 | 167 | 213 | 364 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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