| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.008G013400.2 |
| Family | GH28 |
| Protein Properties | Length: 297 Molecular Weight: 32323.2 Isoelectric Point: 9.1832 |
| Chromosome | Chromosome/Scaffold: 08 Start: 1553341 End: 1555845 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 112 | 291 | 4.79945e-42 |
| WNKACQATGEVDIMIPKGTYLVGPLKFAGPCENVSKIVVHMKGYLKATTNLFKYGDGAGWVEFRWIEGLTLTGGGTFDGQGAKAWPYNSCSTDFNCKLLP TNVKFLAMNRTIVRGITSVNSKFFHMALVECKNFKGSKIKISAPADSPNTDGIHIQRSSGVYFSRSLIGTGDDCISIGQG | |||
| Full Sequence |
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| Protein Sequence Length: 297 Download |
| MSLEIPFKLL LPFSSFSFTG VPAGATTAGL GSQHGQLLPY NNQRTSHFFN VKTFGAQADG 60 LTDDTKVLFP SLSFSIQTPA YHLQYLVCYF IFPFIILFNL LHSSFQAFLS AWNKACQATG 120 EVDIMIPKGT YLVGPLKFAG PCENVSKIVV HMKGYLKATT NLFKYGDGAG WVEFRWIEGL 180 TLTGGGTFDG QGAKAWPYNS CSTDFNCKLL PTNVKFLAMN RTIVRGITSV NSKFFHMALV 240 ECKNFKGSKI KISAPADSPN TDGIHIQRSS GVYFSRSLIG TGDDCISIGQ GILKSP* 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 6.0e-31 | 45 | 291 | 248 | + Probable polygalacturonase At3g15720 | ||
| PLN02155 | PLN02155 | 9.0e-34 | 46 | 291 | 247 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 1.0e-35 | 44 | 291 | 253 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-39 | 116 | 291 | 176 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 3.0e-106 | 23 | 291 | 269 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA16789.1 | 0 | 107 | 291 | 1 | 182 | polygalacturonase-like protein [Arabidopsis thaliana] |
| EMBL | CBI37725.1 | 0 | 46 | 291 | 50 | 251 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_193552.1 | 0 | 106 | 291 | 52 | 234 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002279959.1 | 0 | 46 | 291 | 50 | 251 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002312795.1 | 0 | 13 | 291 | 11 | 241 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.00002 | 184 | 288 | 115 | 228 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 3jur_D | 0.001 | 124 | 291 | 62 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0.001 | 124 | 291 | 62 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0.001 | 124 | 291 | 62 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0.001 | 124 | 291 | 62 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DR933567 | 271 | 20 | 290 | 0 |
| DT736437 | 243 | 49 | 291 | 0 |
| DR944705 | 251 | 20 | 270 | 0 |
| FL763551 | 246 | 46 | 291 | 0 |
| FL746613 | 186 | 106 | 291 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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