Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.008G020100.2 |
Family | GH10 |
Protein Properties | Length: 580 Molecular Weight: 64893.5 Isoelectric Point: 6.175 |
Chromosome | Chromosome/Scaffold: 08 Start: 2317115 End: 2319718 |
Description | Glycosyl hydrolase family 10 protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 224 | 489 | 0 |
QKASGKPIGCAVNKGILDNVGYQNWFTSRFTHTTFENEMKWYTTEPVRGKEDYSLPDSIMTLMKQHNIAVRGHNIFWDDPHYQPNWVPSLQPNDLSAAAN KRINSIMTKYKGQVIGWDVVNENLHSNFFESKLGPDASATFYKMAAGIDHSIPLFMNEFNTLEQKGDAASTPAKYLEKLKNIQTFMGAEAKRMAIGLECH FDVPSLPYIRSSLDTLAATNLPIWLTEIDVQSGSNQAMYLEQVLREGHSHPGVSGMIIWSAWNPNG |
Full Sequence |
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Protein Sequence Length: 580 Download |
MELWQKESVL LFLPLSILLS GLVKVDALSY DYTASIECLA QPHKAQYGGG MIKNPELNEG 60 LIGWSTFGNA VIEHRNESDG NKFVVAGKRN HFQDSVSQKL FLENGKLYTF SAWVQVSEEK 120 ALVRAVFRTV TGLKRAAETV AESKCWSMLK GGLTVDASGP AELFFETDNT SVEVWVDSVS 180 LQPFTQEEWM SHHVESIEKT KRRVRIRVEA EGNPVVNSKI SIHQKASGKP IGCAVNKGIL 240 DNVGYQNWFT SRFTHTTFEN EMKWYTTEPV RGKEDYSLPD SIMTLMKQHN IAVRGHNIFW 300 DDPHYQPNWV PSLQPNDLSA AANKRINSIM TKYKGQVIGW DVVNENLHSN FFESKLGPDA 360 SATFYKMAAG IDHSIPLFMN EFNTLEQKGD AASTPAKYLE KLKNIQTFMG AEAKRMAIGL 420 ECHFDVPSLP YIRSSLDTLA ATNLPIWLTE IDVQSGSNQA MYLEQVLREG HSHPGVSGMI 480 IWSAWNPNGC YRMCLTDNNF KNLATGDVVD KLLKEWGIKA TVEGKTDAAG FFEASLFHGE 540 YEVKISDPVE AANSSVSQRF KVEPRHDSQD QIMLLQVST* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 0.004 | 58 | 171 | 126 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 3.0e-29 | 214 | 453 | 251 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 8.0e-43 | 221 | 501 | 310 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 1.0e-67 | 262 | 509 | 275 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAN10199.1 | 0 | 10 | 577 | 13 | 582 | endoxylanase [Carica papaya] |
RefSeq | NP_195110.3 | 0 | 27 | 577 | 22 | 573 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
RefSeq | XP_002264605.1 | 0 | 23 | 578 | 20 | 573 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002264652.1 | 0 | 25 | 578 | 26 | 582 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002532418.1 | 0 | 25 | 577 | 18 | 566 | Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nq6_A | 3e-25 | 231 | 482 | 15 | 268 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 1xas_A | 2e-22 | 227 | 454 | 12 | 240 | A Chain A, Crystal Structure, At 2.6 Angstroms Resolution, Of The Streptomyces Lividans Xylanase A, A Member Of The F Family Of Beta-1,4-D-Glycanses |
PDB | 1v0n_A | 2e-22 | 227 | 454 | 12 | 240 | A Chain A, Crystal Structure, At 2.6 Angstroms Resolution, Of The Streptomyces Lividans Xylanase A, A Member Of The F Family Of Beta-1,4-D-Glycanses |
PDB | 1v0m_A | 2e-22 | 227 | 454 | 12 | 240 | A Chain A, Crystal Structure, At 2.6 Angstroms Resolution, Of The Streptomyces Lividans Xylanase A, A Member Of The F Family Of Beta-1,4-D-Glycanses |
PDB | 1v0l_A | 2e-22 | 227 | 454 | 12 | 240 | A Chain A, Crystal Structure, At 2.6 Angstroms Resolution, Of The Streptomyces Lividans Xylanase A, A Member Of The F Family Of Beta-1,4-D-Glycanses |