| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.008G064400.2 |
| Family | CE8 |
| Protein Properties | Length: 362 Molecular Weight: 40170.5 Isoelectric Point: 9.8037 |
| Chromosome | Chromosome/Scaffold: 08 Start: 10311808 End: 10313746 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 69 | 354 | 0 |
| SLAEFATVKKAISSIPVVNHCRVVISIGAGIYREKIEIPATMAYITIVGAGADKTVIEWDDTADKMGQSGHSLGTYGSATFAINSPYFIAKNITFKNKAP LPPSGALGKQAVALRISADAAAFIGCKFIGAQDTLYDHIGRHYFKHCYIQGSVDFIFGNGLSLYKHCHLHAVTNSYGALTAQKRESMLEETGFSFVKCKV TGSGALYLGRAWGVFSRVVFVYTYMDKIITPRGWYDWGDKNREMTVFYGQYKCSGPGAEFGGRVSWARELTRQEAKPFISVDFIDG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 362 Download |
| MIMRLFMFIL VLGGASFEVT SNRLSQYEVI EKDYMNWVKQ KSSFKHSLFG KPKNKLKPCL 60 TIRVNKKPSL AEFATVKKAI SSIPVVNHCR VVISIGAGIY REKIEIPATM AYITIVGAGA 120 DKTVIEWDDT ADKMGQSGHS LGTYGSATFA INSPYFIAKN ITFKNKAPLP PSGALGKQAV 180 ALRISADAAA FIGCKFIGAQ DTLYDHIGRH YFKHCYIQGS VDFIFGNGLS LYKHCHLHAV 240 TNSYGALTAQ KRESMLEETG FSFVKCKVTG SGALYLGRAW GVFSRVVFVY TYMDKIITPR 300 GWYDWGDKNR EMTVFYGQYK CSGPGAEFGG RVSWARELTR QEAKPFISVD FIDGHSWLSV 360 L* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02304 | PLN02304 | 3.0e-109 | 72 | 358 | 295 | + probable pectinesterase |
| PLN02432 | PLN02432 | 6.0e-111 | 56 | 358 | 303 | + putative pectinesterase |
| PLN02665 | PLN02665 | 8.0e-115 | 61 | 358 | 300 | + pectinesterase family protein |
| PLN02634 | PLN02634 | 2.0e-115 | 71 | 359 | 290 | + probable pectinesterase |
| PLN02682 | PLN02682 | 0 | 5 | 358 | 359 | + pectinesterase family protein |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI17409.1 | 0 | 15 | 361 | 18 | 364 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002266952.1 | 0 | 15 | 361 | 16 | 362 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002310842.1 | 0 | 33 | 358 | 12 | 336 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002514210.1 | 0 | 25 | 360 | 48 | 383 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
| RefSeq | XP_002531506.1 | 0 | 13 | 358 | 15 | 364 | Pectinesterase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 72 | 358 | 18 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 9.00054e-42 | 72 | 358 | 14 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 9e-31 | 64 | 346 | 35 | 352 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 6e-19 | 73 | 346 | 18 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 6e-19 | 73 | 346 | 18 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
